Sequence of DPV Soybean mosaic virus

Soybean mosaic virus Al5 polyprotein gene, partial cds.

ACC No: AF242844

Dated: 2010-08-05 | Length: 1145 | CRC: 1452422298

                ID   AF242844; SV 1; linear; genomic RNA; STD; VRL; 1145 BP.
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AC   AF242844;
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DT   21-DEC-2000 (Rel. 66, Created)
DT   05-AUG-2010 (Rel. 105, Last updated, Version 2)
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DE   Soybean mosaic virus Al5 polyprotein gene, partial cds.
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KW   .
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OS   Soybean mosaic virus Al5
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
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RN   [1]
RP   1-1145
RA   Wang X., Eggenberger A.L., Nutter F.W.Jr., Hill J.H.;
RT   "Pathogen-derived transgenic resistance to soybean mosaic virus in
RT   soybean";
RL   Mol. Breed. 8:119-127(2001).
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RN   [2]
RP   1-1145
RA   Eggenberger A.L., Hill J.H.;
RT   ;
RL   Submitted (09-MAR-2000) to the EMBL/GenBank/DDBJ databases.
RL   Plant Pathology, Iowa State University, Ames, IA 50011, USA
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FH   Key             Location/Qualifiers
FH
FT   source          1. .1145
FT                   /organism="Soybean mosaic virus Al5"
FT                   /strain="Al5"
FT                   /mol_type="genomic RNA"
FT                   /db_xref="taxon:118657"
FT   CDS             <1. .892
FT                   /codon_start=2
FT                   /product="polyprotein"
FT                   /db_xref="GOA:Q9DR77"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="UniProtKB/TrEMBL:Q9DR77"
FT                   /protein_id="AAG41136.1"
FT                   /translation="DVNAQTSELQRYLEVLDFNHVDDCCESVSLQSGKEKEGDMDAGKD
FT                   PKKSTSSSKGAGTSSKDVNVGSKGKVVPRLQKITRKMNLPMVEGKIILSLDHLLEYKPN
FT                   QVDLFNTRATRTQFEAWYNAVKDEYELDDEQMGVVMNGFMVWCIDNGTSPDANGVWVMM
FT                   DGEEQIEYPLKPIVENAKPTLRQIMHHFSDAAEAYIEMRNSESPYMPRYGLLRNLRDRE
FT                   LARYAFDFYEVTSKTPNRAREAIAQMKAAALSGVNNKLFGLDGNISTNSENTERHTARD
FT                   VNQNMHTLLGMGPQQ"
FT   mat_peptide     <1. .94
FT                   /product="nuclear inclusion protein b"
FT                   /function="RNA-dependent RNA polymerase"
FT                   /note="NIb"
FT   mat_peptide     95. .889
FT                   /product="coat protein"
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SQ   Sequence 1145 BP; 353 A; 195 C; 294 G; 303 T; 0 other;

af242844 Length: 1145  05-AUG-2010  Type: N  Check: 8670  ..

       1  agatgtcaat gcacaaacaa gtgagctgca aagatatctt gaagtgctgg
      51  actttaatca tgttgatgac tgttgtgaat cagtgtctct acaatcaggc
     101  aaggagaagg aaggagacat ggatgcaggt aaggatccaa agaagagcac
     151  cagtagtagc aagggagctg gtacaagcag caaagatgta aatgttggat
     201  caaaggggaa ggtggtgccg cgtttgcaga agattacaag aaagatgaat
     251  cttccaatgg ttgaagggaa gatcattctc agtttggacc acttgcttga
     301  gtataaacct aatcaggttg atttattcaa tactcgagca acaagaacac
     351  aattcgaagc gtggtacaat gcagttaaag atgaatatga gcttgacgat
     401  gaacagatgg gcgtggttat gaatggtttc atggtatggt gcatcgacaa
     451  tggcacatct ccagatgcca atggcgtgtg ggtgatgatg gatggagaag
     501  aacagattga atatccgctg aaacccattg tcgagaatgc aaaaccaact
     551  ctgagacaaa ttatgcacca cttctcagat gcagcagaag cttacattga
     601  gatgagaaat tctgaaagtc cgtatatgcc tagatatgga ctactgagga
     651  atttgagaga tagagagcta gcccgctatg cttttgattt ctatgaggtt
     701  acttccaaaa caccaaacag ggcaagggaa gcaatagcgc agatgaaggc
     751  tgcagctctt tcgggagtta acaacaagtt gtttggactt gatgggaaca
     801  tctcaactaa ctccgaaaat actgaaaggc acactgcaag ggatgtgaat
     851  caaaacatgc acactctttt gggcatgggc ccacagcagt aaaggctaag
     901  taaattggtc acagttatca tttcgggtcg ctttatagtt tgctataata
     951  tagtatttgc actgtcttta agtatagtgt gattgcatca ccaaataatg
    1001  cttttgttta gtgtggtttt aaccacccag tgtgctttat gttatagttt
    1051  atgaatggca gggagaacca ttgtgttgct ggagcccttt ggagagtggt
    1101  tttaaccacg tctagtggcc gaggtgcggc aatgtttgtt gtcct