Sequence of DPV Infectious salmon anemia virus

Infectious salmon anemia virus putative polymerase mRNA, complete cds.

ACC No: AF306548

Dated: 2003-05-29 | Length: 1805 | CRC: 136904622

                !!NA_SEQUENCE 1.0
ID   AF306548   standard; mRNA; VRL; 1805 BP.
XX
AC   AF306548;
XX
SV   AF306548.1
XX
DT   05-SEP-2001 (Rel. 69, Created)
DT   29-MAY-2003 (Rel. 75, Last updated, Version 2)
XX
DE   Infectious salmon anemia virus putative polymerase mRNA, complete cds.
XX
KW   .
XX
OS   Infectious salmon anemia virus
OC   Viruses; ssRNA negative-strand viruses; Orthomyxoviridae;
OC   unclassified Orthomyxoviridae.
XX
RN   [1]
RP   1-1805
RX   MEDLINE; 21342912.
RX   PUBMED; 11450947.
RA   Ritchie R.J., Heppell J., Cook M.B., Jones S., Griffiths S.G.;
RT   "Identification and characterization of segments 3 and 4 of the ISAV
RT   genome";
RL   Virus Genes 22(3):289-297(2001).
XX
RN   [2]
RP   1-1805
RA   Ritchie R.J., Heppell J., Cook M.B., Jones S., Griffiths S.G.;
RT   ;
RL   Submitted (18-SEP-2000) to the EMBL/GenBank/DDBJ databases.
RL   FFA, RPC, 921 College Hill Rd., Fredericton, NB E3B 6Z9, Canada
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1805
FT                   /db_xref="taxon:55987"
FT                   /mol_type="mRNA"
FT                   /organism="Infectious salmon anemia virus"
FT                   /segment="4"
FT   misc_feature    1. .8
FT                   /note="viral consensus motif"
FT   CDS             24. .1760
FT                   /codon_start=1
FT                   /db_xref="UniProt/TrEMBL:Q91BR4"
FT                   /product="putative polymerase"
FT                   /protein_id="AAK97305.1"
FT                   /translation="MDNLRECINRKRRLLALPDVPETSDAFLSDLRHLYMCVAFCDQHK
FT                   TTGDESRFTNLELLDQDEALGAQRAFEAKHGIKGGSLGDVLDHELKKVIEFTFTSGSLY
FT                   IAEQRKRKTQADSIIVCVSEGLNDFSVSHGVLDMGLVETGVNAVRDFCTQNGIPMKINQ
FT                   VGSTRTPTPISTCKISEQITRQINSTITERKMETVLAAIAIKPELKLTQKGCRPCKELE
FT                   DENILWMDPQFCEIDESFPYRGGPYGNFLQELLLTTNDVETNGKDREEVVKKILDNKAF
FT                   TVESGECIITLPDKMTCFGEQEKKRPATIDEVRTAGERFEQSVKPKTQRYGRLSDKWME
FT                   LEKFIFTASKTEVDTFLSVGTERLESVGVCVGALHRATTTRIIRPMIQGGKCWGMMFKT
FT                   KSKMGDTRKEGYCHAIIFGKGEDKSGQNKMTMMGKTVHWHLRVVKSKGDWMAQQLCANK
FT                   SRIWEHDPELVTEGVTVLMTPFSQKIATISRWRAMRLDSMFHVSSAWHHSPACEAASAM
FT                   LRKFVEIVHAINQKRDWGVVGSMEDMVKEVEEIGEHLQTACDFRVYNMCKALIQKIAVS
FT                   TQ"
XX
SQ   Sequence 1805 BP; 639 A; 309 C; 444 G; 413 T; 0 other;

AF306548  Length: 1805  October 13, 2004 17:42  Type: N  Check: 9173  ..

       1  agctaagatt ggctattttc aagatggata acctccgtga atgcataaac
      51  cgcaaaagaa gactacttgc cttaccagat gttcctgaaa cttcggatgc
     101  ctttctaagt gatttgagac atctatacat gtgtgttgct ttctgtgatc
     151  aacacaaaac cactggagac gaatcaagat tcaccaacct ggaattactt
     201  gaccaagatg aagcactagg tgcccaaaga gcttttgaag ccaaacatgg
     251  aataaaagga ggttctttag gagacgttct tgaccatgaa ctgaaaaagg
     301  tcattgaatt tacttttact tctggaagtt tgtatattgc cgaacaaaga
     351  aaaagaaaga ctcaagcaga ctcaataatt gtgtgcgttt cagaaggact
     401  taacgacttc agcgtatcac acggagtgct agacatggga cttgtggaaa
     451  caggggtgaa tgcagtaaga gatttctgca cacaaaacgg aataccaatg
     501  aagataaatc aggtaggatc cacgagaaca ccaacaccga tcagcacatg
     551  caaaatctct gaacaaataa cacgacagat aaacagtaca attactgaaa
     601  ggaaaatgga aacagtactg gcagcaatcg caattaaacc agaactcaaa
     651  ctaactcaga aaggatgcag accttgtaaa gaactagaag atgaaaatat
     701  tctgtggatg gaccctcaat tctgtgaaat tgatgaaagt tttccttaca
     751  gaggagggcc atacgggaac ttcctgcaag aattgctgct tacaaccaac
     801  gacgtagaga ccaacgggaa agacagagaa gaagtagtaa agaagatact
     851  ggataacaag gcgttcaccg ttgaaagtgg tgaatgcata ataacacttc
     901  cagacaaaat gacttgtttc ggagaacagg agaagaagag accagcaaca
     951  atagacgaag tgagaaccgc aggagaaagg tttgaacaga gtgttaaacc
    1001  gaaaacccaa agatatggaa ggttatcaga caaatggatg gagcttgaaa
    1051  agtttatctt tactgcaagc aaaacagaag tggatacttt cctttctgta
    1101  gggaccgaaa gacttgagtc ggttggagtg tgtgtcggag ctttacacag
    1151  agcgaccaca accaggataa ttagacctat gattcaagga gggaaatgtt
    1201  gggggatgat gttcaaaaca aagtccaaaa tgggagacac gaggaaggaa
    1251  ggatactgtc acgcaatcat tttcggaaaa ggggaagata aatcaggaca
    1301  aaacaagatg acaatgatgg ggaaaacagt acattggcat ctaagagtag
    1351  ttaagtctaa aggagactgg atggcgcaac aactctgtgc aaacaaaagc
    1401  agaatatggg aacatgaccc tgagctagta acagaaggag tgacagttct
    1451  aatgacgcct ttttctcaga aaattgccac cattagtaga tggagggcaa
    1501  tgaggttaga cagcatgttt catgtttcta gtgcctggca tcattcacct
    1551  gcgtgtgaag ctgcatcggc aatgctgaga aagtttgtgg agatagtaca
    1601  tgccatcaac cagaaaagag attggggtgt tgtggggagt atggaggaca
    1651  tggtgaagga agtggaggaa ataggggagc acttgcagac ggcatgtgat
    1701  tttagagttt acaacatgtg caaagccttg attcagaaaa ttgcagtcag
    1751  tacccaatga gtggttattt acttgtaaat tgttgtgtgt ttgacgatat
    1801  gtatt