Sequence of DPV Cactus virus X
Cactus virus X, complete genome.
ACC No: AF308158
Dated: 2004-04-27 | Length: 6614 | CRC: 646083910
!!NA_SEQUENCE 1.0
ID AF308158 standard; genomic RNA; VRL; 6614 BP.
XX
AC AF308158;
XX
SV AF308158.2
XX
DT 02-JUL-2001 (Rel. 68, Created)
DT 27-APR-2004 (Rel. 79, Last updated, Version 3)
XX
DE Cactus virus X, complete genome.
XX
KW .
XX
OS Cactus virus X
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Flexiviridae;
OC Potexvirus.
XX
RN [1]
RP 1-6614
RA Liou M.-R., Hung C.-L., Liou R.-F.;
RT "First report of Cactus Virus X on Hylocereus undatus (Cactaceae) in
RT Taiwan";
RL Plant Dis. 85:229-229(2001).
XX
RN [2]
RP 1-6614
RX PUBMED; 15098117.
RA Liou M.R., Chen Y.R., Liou R.F.;
RT "Complete nucleotide sequence and genome organization of a Cactus virus X
RT strain from Hylocereus undatus (Cactaceae)";
RL Arch. Virol. 149(5):1037-1043(2004).
XX
RN [3]
RP 1-6614
RA Liou M.-R., Hung C.-L., Liou R.-F.;
RT ;
RL Submitted (25-SEP-2000) to the EMBL/GenBank/DDBJ databases.
RL Plant Pathology, National Taiwan University, #1, Sec. 4, Roosevelt Road,
RL Taipei 106, Taiwan
XX
RN [4]
RC Sequence update by submitter
RP 1-6614
RA Liou M.-R., Hung C.-L., Liou R.-F.;
RT ;
RL Submitted (02-OCT-2003) to the EMBL/GenBank/DDBJ databases.
RL Plant Pathology, National Taiwan University, #1, Sec. 4, Roosevelt Road,
RL Taipei 106, Taiwan
XX
DR GOA; Q91ND3.
DR GOA; Q91ND6.
DR GOA; Q91ND9.
DR TrEMBL; Q91ND3; Q91ND3.
DR TrEMBL; Q91ND4; Q91ND4.
DR TrEMBL; Q91ND5; Q91ND5.
DR TrEMBL; Q91ND6; Q91ND6.
DR TrEMBL; Q91ND7; Q91ND7.
DR TrEMBL; Q91ND8; Q91ND8.
DR TrEMBL; Q91ND9; Q91ND9.
XX
CC On Oct 3, 2003 this sequence version replaced gi:14582653.
XX
FH Key Location/Qualifiers
FH
FT source 1. .6614
FT /db_xref="taxon:112227"
FT /mol_type="genomic RNA"
FT /organism="Cactus virus X"
FT /specific_host="Hylocereus undatus"
FT CDS 85. .4716
FT /codon_start=1
FT /db_xref="GOA:Q91ND9"
FT /db_xref="TrEMBL:Q91ND9"
FT /note="ORF1; 175 kDa protein; contains methyltransferase
FT domain at N-terminus, putative NTP-binding domain of RNA
FT helicase, and core domain of RNA-dependent RNA polymerase
FT at C-terminus"
FT /product="RNA-dependent RNA polymerase"
FT /protein_id="AAK69579.1"
FT /translation="MARVREVFSSITDSSLKAVIQEEAYKTIQTQLQLAATINPYSQPT
FT DAADVLENLGIITNPLAIEAHTHGAAKAIENDMYNIVANYLPKGNPVTFYYMKKGKLGK
FT FRRGPHQNDRFVNSHFEPKDIARYPEETVVEHLESTPCTTKLDFMGDTLHFWTPKQLLT
FT LFNFSPKLTTLYATIVLPIEATHRLPSLHPAIYTLKYFGDFFMYIPGGHAGASYTHHQK
FT QLAWLFAGQVSGLGIKLTIQILESKGANHLLIIQRGDLLTPPLRTFGSDSPYVQIPPIF
FT LPKDHNMSQPIPTVFAMKMFMYTKSLKEVTPRDLYAKMRQLLPDKELAKFSPSHIVHMM
FT NYFFLLGKLDSVNHFENLLSGSIVRRTFKPLIVWWQHFKEKIKGPADFTKICKAIQWTN
FT LDLTYKVQSFTLSTWENFFSKQIMPEGKNDEDFSDFWDPNSYNPLDSVDDLNAEQLKAW
FT DFLQQRNTGAYPEPKFHDDPLENKSNKEKCTAEQRNFTEGPQTSQASCSTPHNDSQAPN
FT EEKPETQPHITPPKVFTTPHGVVVRPFTADRDCEETWEHFIMGHLRLCDKVGQRQVTLY
FT ARNGKIKTYSYGNVTHKAQPWPAELTAIAKALDVPEEHDHCLFQVFQQGAAINFHSDDE
FT PLIQPGSPITTLSIGHCELLTRDKSNKKIHKQLLSGPIIYTMPSGFQETHQHSVRSLQK
FT NRLSITFRTSVHCNQEDTLPWHKWLPILSAAGFKGNQRQVNPNGGSLILPISDIKKLPT
FT IETGDPGLLEKIKKIHRSPTPFTYDPLRAKAFGSDVKNLRVGALLRHQSKEWLESFSRR
FT TEKDSRSLALTVIHGAGGSGKSQALQDFLRANPDNRITVVLPTNELRLDWVRKLPQAHP
FT SSLKTFEKSLLTPASSTTIMDDYSKLPAGFIEAYIANNPGLECLILTGDSKQSHHHEPN
FT DGAMTSKLSPFTETASLHCRYYLNATHRNRQDLANMLGVYSEVEGRTNITMDTTILPGR
FT HLLVPSMFKKQAYGELGHKVSTYAGCQGITANEIQILIDSDTPMCSQQVMYTALSRAVH
FT AIHFVNTGINNDAFWNKLAATPYLAAFLRLVREEKTKEHQPTEEGPSAPPAPETHFPVE
FT NESTFFDKVTDSMPEEHEKELFHTSDGFSNCVQTEDPIIQMFPHQQAKDETLFWATIEA
FT RLKITSPEKDFTEFISKVHIGDILFQNYKLAMGLPKEPIAFDERLWNCCADEVQKTYLS
FT KPLHMLQNGQARQSPDFDPKMISLFLKSQWVKKIEKLGQPRIKAGQTIASFQQEAVMLY
FT GTMARYMRRVREVFQPKNIMINCERTPEELTSWAAEHWNFNRNSYANDYTAFDQSQDGA
FT MLQFEILKARHHSIPEVYIEGYLDLKCSSMTFLGILKIMRLTGEGPTFDANTECNIAFA
FT HTKLKIPIGTAQLYAGDDCALATVPEDKPSFKMIETEVSLKAKPVIKRQVQGEWAEFCG
FT MLVTPLGVIKDPIKTWAALKLAEKKRRHERHEGQLLKEMLGLVYQHKDPLHSIFSESNP
FT WPTKLTVRKIIKAGGGRVFSTFD"
FT CDS 1427. .1831
FT /codon_start=1
FT /db_xref="TrEMBL:Q91ND8"
FT /note="ORF6"
FT /product="15 kDa protein"
FT /protein_id="AAK69584.1"
FT /translation="MILMLSSSKPGTSCNSATPALTLSPNSMTIPLKTSLTRRNALRNK
FT GTSLRALRLVRPPAPPHTMTRRPPMKRNQRRSPTSPHPRFSPHPTGWWYALSPLIATAR
FT KPGNISSWAISGCATKLVRGRSLSMPEMER"
FT CDS 2945. .3163
FT /codon_start=1
FT /db_xref="TrEMBL:Q91ND7"
FT /note="ORF7"
FT /product="8 kDa protein"
FT /protein_id="AAK69585.1"
FT /translation="MPHTATGRTWRTCSESTQRLRDAPTSPWTPPFFPAGICSSHPCSR
FT NKHTGSWDTRFQPTPGVKESRRMRSKY"
FT CDS 4716. .5405
FT /codon_start=1
FT /db_xref="GOA:Q91ND6"
FT /db_xref="TrEMBL:Q91ND6"
FT /note="ORF2; contains putative NTP-binding domain of RNA
FT helicase"
FT /product="25 kDa protein"
FT /protein_id="AAK69580.1"
FT /translation="METLTALLIANGYTRTDLPISKPLVIHAVAGAGKTTLIRQFLHQH
FT SATNAQTLGTPDKPNLSRKMIRQFSMPKANHFNILDEYCAQPLKGSWDAVFADPLQHPD
FT YALEPHFIKETSHRLGPSTCELISSLGILIYPDSEDQVVTRKGVFESELFGVVIALDEA
FT IFQLASRHGLKPLCPKATIGLQFPVVTVLSSLALEQVEDSTALYIALTRHTKELHVRCP
FT TEADATT"
FT CDS 5368. .5700
FT /codon_start=1
FT /db_xref="TrEMBL:Q91ND5"
FT /note="ORF3"
FT /product="12 kDa protein"
FT /protein_id="AAK69581.1"
FT /translation="MSGAPLRLTPPPDHTRTLFPLTLGLGLSLVVFALTRSTLPSVGDS
FT SHSLPHGGWYRDGTKTVFYSGPKKTAINWSPPIFVLFLTLALYVSYLFESRSRAGSCSH
FT CGSNHT"
FT misc_feature 5521. .5544
FT /note="Region: conserved hydrophobic domain"
FT CDS 5630. .5824
FT /codon_start=1
FT /db_xref="TrEMBL:Q91ND4"
FT /note="ORF4"
FT /product="7 kDa protein"
FT /protein_id="AAK69582.1"
FT /translation="MFLTYLSLGVVLGLAVIAGLTTLNTPSCLIVLSGDQTVVKGCEHI
FT GNLADVITALNNRLSFNKL"
FT CDS 5840. .6514
FT /codon_start=1
FT /db_xref="GOA:Q91ND3"
FT /db_xref="TrEMBL:Q91ND3"
FT /note="ORF5; 24 kDa protein"
FT /product="coat protein"
FT /protein_id="AAK69583.1"
FT /translation="MSTTGVQSSQSSGPRSTPQSGPFQTLSSSQLAALSLGVTSSLLPS
FT PAELVSISQALTTLGASATNLTPLSLEIVNYCFDNGSSPETVFKGDSTVLQMPSPKSPC
FT HHPITTLRQFCRYFAKIIWNYRVSKNLPPAAWEAWAYKPEQKFAAFDFFDGVLNEAALN
FT PIDGLVRVPNEAERLANQTNRNVHLFESNAQKNRALTTSALVTKGLQGSESPRIQFLPG
FT PE"
XX
SQ Sequence 6614 BP; 1793 A; 1983 C; 1402 G; 1436 T; 0 other;
AF308158 Length: 6614 May 5, 2004 12:52 Type: N Check: 9248 ..
1 gaaaaccaac ccaacaccaa accaactcac tcacacctat ccaactcaga
51 agggagctac cgttaccggt atatattctg tgggatggcc cgtgtgcgtg
101 aagttttctc atcgatcact gactcatctc ttaaagccgt aattcaggag
151 gaggcctata agaccatcca aactcaatta caactcgcgg ccacaatcaa
201 cccatactca caacccaccg acgctgctga tgttttagag aacttaggaa
251 tcatcactaa cccattggcc attgaagccc atacccatgg ggcggcaaag
301 gccattgaaa atgacatgta taacatagtt gctaattatc tgcccaaggg
351 gaatccagtc acattctact acatgaagaa aggcaagctc ggaaaattta
401 ggagaggccc acaccagaat gatcgttttg tcaactccca ttttgagccc
451 aaggacatag cccgctaccc agaggaaacg gttgtggaac accttgagtc
501 cactccctgc actacgaagc tggatttcat gggcgacact ctccacttct
551 ggacgccaaa gcaactacta actctcttca actttagtcc caaactaacc
601 actctctacg ctactatagt cttgcctata gaggctacac atagactacc
651 ctctctacac cccgccatat atactctgaa gtacttcggg gacttcttta
701 tgtacatccc tggtggacac gcaggcgcct cctacaccca tcaccagaaa
751 caactagcat ggctttttgc cggtcaagtg tctggcctag gcattaagct
801 caccatacag attctggaga gcaagggtgc aaatcacctg ctcataattc
851 aaaggggtga tctgctcact cctcccctga ggactttcgg ctctgactcc
901 ccctatgtgc aaatcccacc tatcttcctc cccaaagacc ataatatgtc
951 ccagcccatc cccacggtgt ttgcaatgaa aatgttcatg tataccaagt
1001 ccctgaaaga ggtcactccg cgtgatcttt atgcgaaaat gagacagctg
1051 ctcccggata aagaactggc taaattctcc ccaagccaca ttgttcacat
1101 gatgaactat ttcttcctgc tcggaaaatt agactctgtt aatcactttg
1151 aaaacttgct atcagggtca atcgtccgca ggacatttaa gccactcatc
1201 gtctggtggc agcattttaa ggaaaaaatc aaggggcctg ctgattttac
1251 aaagatctgc aaagcgattc agtggactaa tctcgacctc acatacaaag
1301 tccaatcctt cactctcagc acatgggaga atttcttctc aaagcagatc
1351 atgccagaag ggaagaatga cgaggacttt tcggacttct gggacccgaa
1401 ctcctacaac cccttagact ctgtggatga tcttaatgct gagcagctca
1451 aagcctggga cttcctgcaa cagcgcaaca ccggcgctta ccctgagccc
1501 aaattccatg acgatcccct tgaaaacaag tctaacaagg agaaatgcac
1551 tgcggaacaa aggaacttca ctgagggccc tcagactagt caggcctcct
1601 gctccacccc acacaatgac tcgcaggccc ccaatgaaga gaaaccagag
1651 acgcagcccc acatcacccc acccaaggtt ttcaccacac cccacggggt
1701 ggtggtacgc cctttcaccg ctgatcgcga ctgcgaggaa acctgggaac
1751 atttcatcat gggccatctc aggctgtgcg acaaagttgg tcagaggcag
1801 gtcactctct atgccagaaa tggaaagata aagacctaca gttacggaaa
1851 tgtaacccac aaggctcaac cctggcccgc tgagctcacg gccatcgcca
1901 aagcccttga tgtgcctgag gagcacgacc actgcctctt ccaggtcttc
1951 caacagggag ctgcaatcaa ctttcattct gacgacgagc cactgattca
2001 accaggctca cccatcacca ctcttagcat tgggcattgt gaactgctca
2051 ccagggataa atccaacaaa aaaattcaca agcaactcct ctccggcccc
2101 atcatctaca ccatgccatc aggcttccag gagacccacc aacactcagt
2151 gcgttctcta caaaagaacc gactctccat cactttccgc accagtgtac
2201 actgcaacca agaggacacc ctcccatggc acaagtggct gcccattctg
2251 agtgcagccg ggttcaaagg caatcagaga caggtcaatc ccaatggcgg
2301 gtcgctcatt ctcccaatct ccgacatcaa aaaactgccc acaattgaga
2351 ctggtgaccc aggcttgcta gaaaaaatca agaaaatcca taggagtccc
2401 acacccttca catatgaccc actccgagcc aaggcttttg gttcagatgt
2451 caagaatctc agagtaggcg ccctactccg acaccagtcc aaagaatggc
2501 ttgagagctt ttccagaagg actgagaaag acagccgctc tcttgctcta
2551 acggtcattc atggtgctgg gggtagcggc aagtctcagg cactgcagga
2601 cttcctccgg gccaacccag acaatcgcat aacggtggtc ctgcccacca
2651 atgagctgag actcgactgg gtacgcaaac tgccacaagc ccatccttcc
2701 tctctaaaga cctttgagaa gagtctgctc acgccagcca gttctactac
2751 tatcatggac gattactcca agcttcccgc gggattcatt gaggcctaca
2801 tcgcaaacaa ccccggattg gagtgtctga tactcacagg ggattcaaag
2851 caaagccacc accatgagcc taacgacgga gccatgacca gcaaactgtc
2901 gccattcact gagaccgcgt cactccactg cagatactac ctcaatgcca
2951 cacaccgcaa caggcaggac ctggcgaaca tgctcggagt ctactcagag
3001 gttgagggac gcaccaacat caccatggac accaccattc ttcccggcag
3051 gcatctgctc gtcccatcca tgttcaagaa acaagcatac ggggagttgg
3101 gacacaaggt ttcaacctac gccgggtgtc aaggaatcac ggcgaatgag
3151 atccaaatac tgattgactc tgacacccca atgtgctccc agcaggtcat
3201 gtacaccgcc ctcagtaggg ccgtgcacgc cattcacttc gtcaacacag
3251 ggataaacaa tgatgccttc tggaacaagc tggcagccac gccctatctc
3301 gcggcatttc tgaggttggt ccgggaagag aagacgaaag agcatcaacc
3351 cacagaagag gggcccagtg caccgcccgc tcccgagacc cacttcccag
3401 tggagaacga gtccacattc tttgacaagg tcacagacag catgccggag
3451 gagcatgaga aagaactctt tcacactagc gatggtttca gcaattgcgt
3501 tcagactgaa gatcccatca tccaaatgtt cccccaccaa caagcaaaag
3551 atgagactct cttctgggca acaattgagg ctcgactgaa aataacgagc
3601 cccgagaaag acttcaccga gttcatctcc aaggtacaca ttggggacat
3651 tctcttccag aattacaagc ttgccatggg gctcccgaaa gagccaatcg
3701 cattcgacga acgtctttgg aactgctgcg cggacgaggt gcagaagacc
3751 tacctgtcta agccactgca catgcttcaa aacggacagg ctaggcagtc
3801 ccctgacttt gaccccaaaa tgatcagcct cttcctcaag tcacaatggg
3851 ttaagaagat tgagaaactt ggccaaccgc gcattaaggc tgggcagacc
3901 atcgcctctt tccaacaaga ggcggtcatg ctttacggaa caatggcccg
3951 atacatgagg cgtgtccgcg aggtttttca gcctaagaat atcatgatca
4001 actgcgagag gacccctgaa gagcttacca gctgggcagc cgagcactgg
4051 aacttcaatc gcaattcata tgccaacgac tacacggctt ttgaccagtc
4101 tcaggacggt gcgatgctcc aatttgaaat tctcaaagct aggcaccact
4151 ccatcccgga agtgtacatt gagggctacc tggacttgaa atgctcatcc
4201 atgaccttcc ttggcatatt gaaaatcatg cgactcactg gagaggggcc
4251 cactttcgac gccaacactg aatgcaacat cgccttcgcc cacaccaagc
4301 tgaaaatacc aatcggcact gctcagctct acgcgggtga cgactgcgct
4351 ttggctactg tcccagagga taagccaagc ttcaaaatga ttgaaaccga
4401 ggtctccctc aaagccaaac cggtcatcaa aaggcaggtc caaggggaat
4451 gggcagaatt ttgtgggatg ttagttaccc cccttggcgt catcaaggac
4501 cccatcaaga cctgggcggc actgaagctt gccgaaaaga agaggcgaca
4551 tgaaagacat gagggacagt tattgaaaga aatgcttggc cttgtctacc
4601 aacacaagga ccctctccac tcaatcttct cagaaagcaa tccatggccc
4651 accaaattaa ccgttcgaaa gatcatcaaa gcaggtggag gccgtgtttt
4701 ctcaactttt gactgatgga gacgctaact gccctactaa tcgctaacgg
4751 atacactagg actgacttgc ccatttccaa gcccttagtc atccatgctg
4801 tggccggtgc aggaaagacc accctgatta ggcaatttct acaccaacac
4851 tcggccacga atgctcagac gctgggcacg ccagacaagc ccaacctctc
4901 taggaagatg atccgacaat tctccatgcc caaggccaac catttcaaca
4951 tcctcgatga gtactgtgca cagcctctga aaggaagttg ggatgcggtg
5001 ttcgccgacc ctctccagca tcctgactat gccctggaac cccatttcat
5051 caaagagacc tcccaccgac ttggtccaag cacatgcgag ctgatctcca
5101 gccttggaat cctcatttat cctgactcag aggatcaagt agtcacaagg
5151 aaaggggttt tcgagtctga actcttcggt gtagtcatag cccttgacga
5201 agccatcttc caactcgcga gcaggcacgg actcaaaccg ctctgcccca
5251 aagcaaccat tggcctccaa tttcctgtcg tgacagttct atcttcccta
5301 gccctcgagc aggtcgaaga cagcacagcg ctctacattg cgctcacgcg
5351 tcacacaaaa gaactccatg tccggtgccc cactgaggct gacgccacca
5401 cctgatcaca ctagaaccct ttttccacta accctaggct taggactatc
5451 gctagtagta ttcgcactga ctaggtccac attacccagt gtcggggatt
5501 cttcccacag tttaccacac ggaggctggt atcgtgacgg cacgaaaaca
5551 gtcttctact caggccctaa gaaaacggcc attaactgga gtccacccat
5601 ctttgtcctt ttcctgacct tagccctcta tgtttcttac ctatttgagt
5651 ctaggagtcg tgctgggtct tgcagtcatt gcgggtctaa ccacacttaa
5701 cacccctagt tgtctgatcg tcttgtcggg tgaccagact gttgtcaagg
5751 gctgtgaaca cattggcaat ctcgccgacg tcattacggc acttaataac
5801 cgcttaagtt tcaacaaatt gtgaaaatca agactaatca tgtctactac
5851 tggagtccag tcttctcagt cctccggacc ccgctccact cctcagtccg
5901 gacctttcca aaccttgtcc tcctcccagc ttgcggccct ctcactcggg
5951 gtcaccagct ctcttctacc ttccccagct gagctagtca gcatctcaca
6001 agccctgacc accctaggcg cgtctgccac caacctcact ccactatcac
6051 tagaaatagt taattactgc tttgacaacg ggtcttcacc agaaacagtc
6101 ttcaagggtg actcaaccgt gctccagatg ccgtctccaa agtcgccatg
6151 ccatcaccca attaccactc tgagacaatt ctgcagatac tttgcaaaga
6201 tcatctggaa ttatcgagtt tcaaagaatc tccctccagc ggcatgggaa
6251 gcctgggctt acaaacccga gcaaaagttt gctgccttcg acttcttcga
6301 cggcgttctc aatgaggcgg ccctcaaccc catagatgga cttgtgcgtg
6351 tacctaacga ggctgaacga ctcgccaacc aaactaatcg caacgtccat
6401 ctcttcgaga gcaacgcaca aaagaacaga gcccttacca cctcggctct
6451 tgtcaccaag gggctccaag gttcagagtc tccaaggatc caatttctcc
6501 caggccctga gtagtttaga aatgaacaag gctcccgcag tagcctccca
6551 ccgggttcca actgtgccta tcctgcttaa cttaataagc ctagccttct
6601 gttttaatgc aagt