Sequence of DPV Infectious salmon anemia virus
Infectious salmon anemia virus isolate RPC/NB-877 NS2 and NS1 genes, complete cds.
ACC No: AF312316
Dated: 2003-05-29 | Length: 878 | CRC: -1106179703
!!NA_SEQUENCE 1.0
ID AF312316 standard; genomic RNA; VRL; 878 BP.
XX
AC AF312316;
XX
SV AF312316.1
XX
DT 09-MAY-2001 (Rel. 67, Created)
DT 29-MAY-2003 (Rel. 75, Last updated, Version 2)
XX
DE Infectious salmon anemia virus isolate RPC/NB-877 NS2 and NS1 genes,
DE complete cds.
XX
KW .
XX
OS Infectious salmon anemia virus
OC Viruses; ssRNA negative-strand viruses; Orthomyxoviridae;
OC unclassified Orthomyxoviridae.
XX
RN [1]
RP 1-878
RX MEDLINE; 21304384.
RX PUBMED; 11411649.
RA Kibenge F.S., Garate O.N., Johnson G., Arriagada R., Kibenge M.J.,
RA Wadowska D.;
RT "Isolation and identification of infectious salmon anaemia virus (ISAV)
RT from Coho salmon in Chile";
RL Dis. Aquat. Org. 45(1):9-18(2001).
XX
RN [2]
RP 1-878
RA Kibenge F.S.B., Kibenge M.J.T., McKenna P.K.;
RT "Genome segment 8 of infectious salmon anaemia virus";
RL Unpublished.
XX
RN [3]
RP 1-878
RA Kibenge F.S.B., Kibenge M.J.T., McKenna P.K.;
RT ;
RL Submitted (11-OCT-2000) to the EMBL/GenBank/DDBJ databases.
RL Pathology and Microbiology, Atlantic Veterinary College, UPEI, 550
RL University Avenue, Charlottetown, P.E.I. C1A 4P3, Canada
XX
FH Key Location/Qualifiers
FH
FT source 1. .878
FT /country="Canada"
FT /db_xref="taxon:55987"
FT /mol_type="genomic RNA"
FT /virion
FT /organism="Infectious salmon anemia virus"
FT /isolate="RPC/NB-877"
FT /specific_host="Atlantic salmon"
FT /segment="8"
FT CDS 12. .602
FT /codon_start=1
FT /db_xref="UniProt/TrEMBL:Q910W0"
FT /note="non structural protein 2; ORF3"
FT /product="NS2"
FT /protein_id="AAK51694.1"
FT /translation="MNESQWIQKHLPCMREANPKPRELIRHALKKKKRPEVVYAMGVLL
FT TLGGESGLTVEFPVPEGKTVKVKTLNQLVNGMISRATMTLYCVMKDPPSGSMATLMRDH
FT IRNWLKEESGCQDADGGEEKWAMVYGMISPDMAEEKTMLKELKTMLHSRMQMYALGASS
FT KALENLEKAIVAAVHRLPASCSTEKMVLLGYLK"
FT CDS 26. .751
FT /codon_start=1
FT /db_xref="UniProt/TrEMBL:Q91TF4"
FT /note="non structural protein 1; ORF2"
FT /product="NS1"
FT /protein_id="AAK51693.1"
FT /translation="MDTKTSTMHERSKPKTTGADQTCLEEEKETRGGLRNGSSSDTGGR
FT ERTDRGVSCSRRKNCEGQNLEPIGERNDQSSDDDPLLCDERSTIGKHGNADERPHQELA
FT EGGIRMPGRGWWRGKMGNGVWYDFTRHGRGEDDAEGAENNATQQDADVCSGCKFESPRE
FT FRKGHRRCSSSTSGILLDREDGASGVPEVSFKERMEAEKKKLKELDDKIYKLRRRLRKM
FT EYKKMGINRETDKLEDSIQ"
XX
SQ Sequence 878 BP; 295 A; 155 C; 239 G; 189 T; 0 other;
AF312316 Length: 878 October 13, 2004 17:42 Type: N Check: 559 ..
1 ggctatctac catgaacgaa tcacaatgga tacaaaaaca tctaccatgc
51 atgagagaag caaacccaaa accacgggag ctgatcagac atgccttgaa
101 gaagaaaaag agaccagagg tggtttacgc aatgggagtt cttctgacac
151 tggggggaga gagcggactg accgtggagt ttcctgttcc agaaggaaaa
201 actgtgaagg tcaaaacctt gaaccaattg gtgaacggaa tgatcagtcg
251 agcgacgatg accctctact gtgtgatgaa agatccacca tcgggaagca
301 tggcaacgct gatgagagac cacatcagga actggctgaa ggaggaatca
351 ggatgccagg acgcggatgg tggagaggaa aaatgggcaa tggtgtatgg
401 tatgatttca cccgacatgg cagaggagaa gacgatgctg aaggagctga
451 aaacaatgct acacagcagg atgcagatgt atgctctggg tgcaagttcg
501 aaagccctag agaatttaga aaaggccatc gtcgctgcag ttcatcgact
551 tccggcatcc tgctcgacag agaagatggt gcttctgggg tacctgaagt
601 aagcttcaaa gaaagaatgg aagcggagaa gaagaaactg aaagagctgg
651 acgacaagat ctacaagcta aggagaagat tgaggaagat ggagtacaag
701 aaaatgggga tcaaccgaga aaccgacaaa ttggaggact ctatacaata
751 aattgacctt ctcaatacct atttttgtta tgctataatt ggtgatgaat
801 ctaaagattt cttgttaatt caattctatg tgttgtatgg gatattttgg
851 ttgtgtactt gatcattata caaaagaa