Sequence of DPV Turnip mosaic virus

Turnip mosaic virus strain JO polyprotein gene, partial cds.

ACC No: AF312909

Dated: 2001-01-29 | Length: 1296 | CRC: 1780942886

                !!NA_SEQUENCE 1.0
ID   AF312909   standard; DNA; VRL; 1296 BP.
XX
AC   AF312909;
XX
SV   AF312909.1
XX
DT   29-JAN-2001 (Rel. 66, Created)
DT   29-JAN-2001 (Rel. 66, Last updated, Version 1)
XX
DE   Turnip mosaic virus strain JO polyprotein gene, partial cds.
XX
KW   .
XX
OS   Turnip mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1296
RA   Nomura K., Uekusa H., Kita N.;
RT   "Characterization of turnip mosaic virus isolated in Japan";
RL   Unpublished.
XX
RN   [2]
RP   1-1296
RA   Nomura K., Uekusa H., Kita N.;
RT   ;
RL   Submitted (13-OCT-2000) to the EMBL/GenBank/DDBJ databases.
RL   Biotechnology and Bio-resource Division, Kanagawa Institution of
RL   Agricultural Science, Kamilkisawa 1617, Kanagawa 259-1204, Japan
XX
DR   SPTREMBL; Q99EM9; Q99EM9.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1296
FT                   /db_xref="taxon:12230"
FT                   /organism="Turnip mosaic virus"
FT                   /strain="JO"
FT   CDS             <1. .1086
FT                   /codon_start=1
FT                   /db_xref="SPTREMBL:Q99EM9"
FT                   /product="polyprotein"
FT                   /protein_id="AAG59877.1"
FT                   /translation="DKLTHEIRKFYAWMIEQAPFSSLPQEGKAPYIPETALKELYLDKE
FT                   PAQEDLPHYLQAIFEDYENGAEACVYHQAGEMLGAGLTDEQKQAEEEKKEREKAEKERE
FT                   RQKQLALKKGKDVAQEEGKRDKEVNAGTSGTFSVPRLKSLTSKMRVPRYEQRVALNLDH
FT                   LILYTPEQTIFPNTLSTRKQLNTWFEGVMADYELTEDKMQIIFNGLMVWCIENGTSPNI
FT                   NGMWVMMDGDDQVEFPIKPLIDHAKPTFRQIMAHFSDVAEAYIEKRNQDRPYMPRYGLQ
FT                   RNLTDMSLARYAFDFYEMTSRTPIRAREAHIQMKAAALRGANNNLFGLDGNVGTTVENT
FT                   ERHTTEDVNRNMHNLLGVKGL"
XX
SQ   Sequence 1296 BP; 405 A; 257 C; 329 G; 305 T; 0 other;

AF312909  Length: 1296  December 21, 2001 15:30  Type: N  Check: 6823  ..

       1  gacaagttaa ctcacgagat acgcaagttt tacgcgtgga tgattgaaca
      51  agctccattt agctccctac cacaagaagg gaaagctcct tacataccgg
     101  aaacagcgct gaaggaactc taccttgata aggaaccagc tcaagaggat
     151  ctcccccatt atttgcaagc aatctttgaa gattatgaaa atggtgctga
     201  agcttgtgtt tatcaccagg caggtgagat gcttggtgca ggtttaacag
     251  acgagcaaaa gcaggcggag gaggagaaga aggagagaga gaaggcagaa
     301  aaggaacgag agcggcagaa gcagttggca ctcaagaaag gcaaggatgt
     351  tgcacaagaa gagggaaaac gcgacaagga agtaaacgct ggaacctctg
     401  gaactttcag tgtacccaga cttaagagtc tgacaagcaa gatgcgcgtg
     451  ccaagatacg agcaaagagt ggctctaaac ctcgatcatc taatcctata
     501  cacgccggag cagacaattt ttcccaacac actttcaacg cgaaagcagt
     551  tgaacacatg gtttgaaggt gtaatggctg attacgaact gacggaggac
     601  aaaatgcaaa ttattttcaa tggtctaatg gtctggtgca ttgagaacgg
     651  aacttcccca aacataaacg gaatgtgggt gatgatggac ggcgatgatc
     701  aggtggaatt cccgatcaaa ccgctcattg accacgccaa acccacattt
     751  aggcagataa tggcccattt cagtgacgta gctgaagcgt acattgaaaa
     801  gcgtaaccaa gaccgaccat acatgccacg atatggtctt cagcgcaatt
     851  taaccgacat gagcttagct cgatacgcgt ttgatttcta tgaaatgact
     901  tctagaactc caatacgtgc gagagaagca cacatccaga tgaaagcagc
     951  agcactgcgt ggcgcaaata acaatttgtt cggcttggat ggaaacgttg
    1001  gtacaacggt agagaacacg gagaggcata cgaccgagga cgttaatcgg
    1051  aacatgcata acttacttgg cgttaagggg ttatgaagtt gtatgctggt
    1101  agactataag tatttaagtt tactcgttag tattctcgct tatgggaaat
    1151  atgtaagttt gttaaagcag ccagtgtgac tttgtcatgt gtgttgttgt
    1201  tactttctat attttcgccg aacattttat tggtgttagc gcatgtggtg
    1251  aggatcgtcc tcgattgcct taacatttga taggatgcaa gggaca