Sequence of DPV Papaya ringspot virus

Papaya ringspot virus isolate BA-IT1 biotype P coat protein (cp) gene, partial cds.

ACC No: AF344639

Dated: 2001-04-03 | Length: 924 | CRC: 1682002896

                !!NA_SEQUENCE 1.0
ID   AF344639   standard; RNA; VRL; 924 BP.
XX
AC   AF344639;
XX
SV   AF344639.1
XX
DT   03-APR-2001 (Rel. 67, Created)
DT   03-APR-2001 (Rel. 67, Last updated, Version 1)
XX
DE   Papaya ringspot virus isolate BA-IT1 biotype P coat protein (cp) gene,
DE   partial cds.
XX
KW   .
XX
OS   Papaya ringspot virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-924
RA   Lima R.C.A., Souza Junior M.T., Pio-Ribeiro G., Lima J.A.A.;
RT   "Sequences of the coat protein gene from 13 Brazilian isolates of Papaya
RT   ringspot virus, and the assessment of the gene variability in Brazil and
RT   around the world";
RL   Unpublished.
XX
RN   [2]
RP   1-924
RA   Lima R.C.A., Souza Junior M.T., Pio-Ribeiro G., Lima J.A.A.;
RT   ;
RL   Submitted (02-FEB-2001) to the EMBL/GenBank/DDBJ databases.
RL   PBI - Cenargen, Embrapa, Parque Estacao Biologica, Final Av. W5 Norte,
RL   Brasilia, DF 70770-900, Brazil
XX
DR   SPTREMBL; Q990H3; Q990H3.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .924
FT                   /country="Brazil: Itabela, Bahia"
FT                   /db_xref="taxon:12205"
FT                   /note="biotype: P"
FT                   /organism="Papaya ringspot virus"
FT                   /isolate="BA-IT1"
FT                   /specific_host="Carica papaya L."
FT   CDS             <1. .924
FT                   /codon_start=1
FT                   /db_xref="SPTREMBL:Q990H3"
FT                   /gene="cp"
FT                   /product="coat protein"
FT                   /protein_id="AAK29032.1"
FT                   /translation="SRSIDDYQSARSSNTHVFHQSKNEAVDAGLNEKRKEKEKQKEKEE
FT                   EKQKEKEKDGVSDGNDVSTSTRTGERDRDVNVGTSGTFTVPRTKSFTDKMILPRIKGKT
FT                   VLNLNHLLQYNPQQIDISNTRATQSQFEKWYEGVRNDYGLNDNEMQIMLNGLMVWCIEN
FT                   GTSPDISGVWVMMDGETQVDYPIKPLIEHATPSFRQIMAHFSNAAEAYITKRNATERYM
FT                   PRYGIKRNLTDISLARYAFDFYEVNSKTPDRAREAHMQMKAAALRNTNRRMFGMDGSVS
FT                   NKEENTERHTVEDVNRDMHSLLGMRN"
XX
SQ   Sequence 924 BP; 323 A; 157 C; 221 G; 223 T; 0 other;

AF344639  Length: 924  December 21, 2001 15:32  Type: N  Check: 7116  ..

       1  tcaaggagca ttgatgatta tcaatctgct cgtagcagca atacacatgt
      51  gtttcatcag tccaaaaatg aagctgtgga tgctggttta aatgaaaagc
     101  gcaaggaaaa agagaaacaa aaagaaaaag aagaagaaaa gcaaaaagag
     151  aaagaaaaag acggtgttag tgacggaaat gatgtgtcaa ctagcacaag
     201  aactggagag agagacagag atgtcaatgt tgggaccagt ggaaccttca
     251  ctgtcccgag aacaaaatca tttactgata agatgatttt acctagaatt
     301  aagggaaaga ctgtccttaa tttaaatcat ctccttcagt ataatccgca
     351  acaaattgac atttctaaca ctcgtgccac tcaatcacaa tttgagaagt
     401  ggtatgaggg agtgaggaat gattatggcc ttaatgataa tgaaatgcaa
     451  ataatgttaa atggcttgat ggtttggtgc atcgaaaacg gtacatctcc
     501  agacatatct ggtgtctggg ttatgatgga tggggaaacc caggttgatt
     551  atccaatcaa gcctttaatt gagcatgcta ctccgtcgtt taggcaaatt
     601  atggctcatt tcagtaatgc ggcagaagca tacattacaa agagaaatgc
     651  tactgagagg tatatgccgc gatatgggat caagagaaat ttgactgaca
     701  ttagtctcgc tagatatgct ttcgatttct atgaggtgaa ttcgaaaaca
     751  cctgataggg ctcgcgaagc tcacatgcag atgaaagctg cagcgctgcg
     801  aaacactaat cgcagaatgt ttggtatgga cggcagtgtc agtaacaagg
     851  aagaaaacac ggagagacac acagtggaag atgtcaatag agacatgcac
     901  tctctcctgg gtatgcgcaa ctga