Sequence of DPV Pea streak virus
Pea streak virus replicase (rdrP) gene, partial cds; and Tgb1 (tgb1), Tgb2 (tgb2), Tgb3 (tgb3), and coat protein (cp) genes, complete cds.
ACC No: AF354652
Dated: 2001-04-28 | Length: 2658 | CRC: 1808825919
!!NA_SEQUENCE 1.0
ID AF354652 standard; RNA; VRL; 2658 BP.
XX
AC AF354652;
XX
SV AF354652.1
XX
DT 28-APR-2001 (Rel. 67, Created)
DT 28-APR-2001 (Rel. 67, Last updated, Version 1)
XX
DE Pea streak virus replicase (rdrP) gene, partial cds; and Tgb1 (tgb1), Tgb2
DE (tgb2), Tgb3 (tgb3), and coat protein (cp) genes, complete cds.
XX
KW .
XX
OS Pea streak virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Carlavirus.
XX
RN [1]
RP 1-2658
RA Cavileer T.D., Berger P.H.;
RT "Molecular evidence establishing the relationship between pea streak virus
RT and alfalfa latent virus";
RL Unpublished.
XX
RN [2]
RP 1-2658
RA Cavileer T.D., Berger P.H.;
RT ;
RL Submitted (27-FEB-2001) to the EMBL/GenBank/DDBJ databases.
RL PSES, University of Idaho, AgSci, Rm. 242, Moscow, ID 83844-2339, USA
XX
FH Key Location/Qualifiers
FH
FT source 1. .2658
FT /db_xref="taxon:157777"
FT /note="synonym: PeSV"
FT /organism="Pea streak virus"
FT /strain="ATCCPV-87"
FT /specific_host="Pisum sativum"
FT CDS <1. .410
FT /codon_start=3
FT /note="contains GDD motif"
FT /gene="rdrP"
FT /product="replicase"
FT /protein_id="AAK40105.1"
FT /translation="FAGDDMCASKHLKVSDKFEDFLSKLKLKAKVQFTKNPTFCGWSLL
FT PFGIFKKPQLVYERICIAREKKNLHNCIDNYAIELSYAYKRGEQAVNAMNEEETDAFYN
FT CVRVIIKRSHLLRSDVKTVFLNAKSLMESLH"
FT CDS 442. .1176
FT /codon_start=1
FT /note="membrane binding; contains ATP/GTP binding motif
FT GAGKTS; associated with cell-to-cell movement"
FT /gene="tgb1"
FT /product="Tgb1"
FT /protein_id="AAK40106.1"
FT /translation="MDVFINNLLECGFRRNKIVFDLPIVVLAVPGAGKTSSIRRLLRQG
FT SRFEAWTFGVADHHNCSGRFIKGISEESKPDPSKFILIDEFQRGDWEKLKPFAIFGDIA
FT QLMLKSSAAFETVFSKCSSHRVPLPIVKLLQELDFEITSEREGVLEIRTLLGSEPEGVV
FT TCFESEVCEFLDYNQINHKSPADIIGLEFPTVSLVISGKYAVGVHRAEFYICCTRATEK
FT LLIITPEPEGFHNCSNAIDSTS"
FT CDS 1154. .1468
FT /codon_start=1
FT /note="membrane binding; associated with cell-to-cell
FT movement"
FT /gene="tgb2"
FT /product="Tgb2"
FT /protein_id="AAK40107.1"
FT /translation="MPLIAPPDNSRSFLALAIGAGIAIIIFTLRSNQLPHVGDNIHSLP
FT HGGFYKDGTKTIQYHSPARVSNNWFKGPNNIQALALVLLIIGLIHASSLRTSKGCNCHK
FT "
FT CDS 1450. .1650
FT /codon_start=1
FT /note="membrane binding; associated with cell-to-cell
FT movement; contains conserved TGES nucleic acid binding
FT domain"
FT /gene="tgb3"
FT /product="Tgb3"
FT /protein_id="AAK40108.1"
FT /translation="MQLSQIIVGLISCCVVLLSLHVIEFYLKNTQNSCTIILTGESVKI
FT LGCDFSSEFIEYAKTLKVQAI"
FT CDS 1687. .2571
FT /codon_start=1
FT /note="capsid protein; contains conserved TGG motif"
FT /gene="cp"
FT /product="coat protein"
FT /protein_id="AAK40109.1"
FT /translation="MAEQQKAAEEKARVEARLKQQLEQQSSKLGSEKEFIRDAEGLQKS
FT LLERFQALQDLTAKSIAGSSIVNGGWEADRKRLKVSDKMKLDGSNIFTRPTLDDLQKLG
FT WNPEANQVATAENLAKISAKLKELGVPPEHMARTFWDVAMYCTAVGASRYTNPQGSINY
FT PEGSITRDAIFGVIREQCTLRQVCRSFAPIIWNYMHVNNMPPTNWAEKGFNNDVKFAAF
FT DFFDFVECPASIQPADGLIRRPTSDEYIAFNTHKKNALARADRNSRYASNDASVTGGMF
FT GCGAKENWRNNAC"
XX
SQ Sequence 2658 BP; 746 A; 506 C; 640 G; 766 T; 0 other;
AF354652 Length: 2658 December 21, 2001 15:32 Type: N Check: 8415 ..
1 gtttcgcggg ggatgatatg tgtgcttcaa aacatttgaa agttagtgac
51 aaatttgaag atttcttatc caagttgaag ttgaaagcca aagtgcagtt
101 cactaagaac cccacttttt gtggttggtc tttgctgcca ttcggtattt
151 tcaagaagcc tcaattggtg tatgaaagaa tctgtattgc cagggagaag
201 aagaacttgc ataattgcat tgataattat gccattgagt tgtcttacgc
251 ttacaagcgc ggggagcaag cagttaatgc tatgaatgag gaggaaactg
301 atgcttttta caattgtgta agggtcatta tcaaaagaag tcacttacta
351 cggagcgatg ttaagactgt gttcttgaac gccaaatctc tgatggaaag
401 tttgcattaa gcttagatta tcgctaatat agtttgatta gatggatgtg
451 ttcataaaca atttgttaga gtgtggtttt aggagaaata aaattgtgtt
501 tgatttgccc atagtagttt tagctgttcc cggcgctggt aaaacttcaa
551 gtattaggcg tttgttgcgt cagggttcaa ggtttgaggc ctggactttt
601 ggggtagcgg accatcataa ctgttctggc cgttttatca aaggaatctc
651 tgaggaatcc aaacctgatc ctagcaagtt tattctgata gacgaattcc
701 agagaggtga ttgggaaaag ctcaaacctt ttgccatttt tggcgacatc
751 gctcagttaa tgctaaagag ttctgctgct tttgagaccg tattctcgaa
801 gtgttcttcc catcgagtcc ctctacccat cgtcaaactc ttgcaagagc
851 tggatttcga gatcacgagt gagcgtgagg gcgtactaga aatcaggacc
901 ctgctcggat ctgaaccaga gggtgttgtg acctgtttcg aatctgaagt
951 ctgcgagttc ctcgattaca atcagatcaa ccataagagt cccgcggaca
1001 ttattggtct ggaattccca accgtctctc tagtcatatc tggcaagtac
1051 gctgtagggg ttcacagagc tgaattttac atctgctgta ctagggctac
1101 agagaaactc ttaattataa caccggagcc agaggggttt cacaattgtt
1151 caaatgccat tgatagcacc tcctgataat tcaagatcat tccttgcttt
1201 ggcaattgga gcgggcattg cgattattat attcactctg aggtccaacc
1251 aattgcctca cgttggagac aatattcact cattgccgca cggaggtttt
1301 tataaggacg gaacaaaaac catacagtac cactcccccg cgagagtctc
1351 gaacaattgg ttcaagggcc caaacaacat acaggcttta gctttggttc
1401 tgctgatcat tggtctgatt cacgcctcat ccttaagaac aagcaaggga
1451 tgcaactgtc acaaataatt gttggtttga tttcctgctg tgtagtacta
1501 cttagtttgc atgttattga attttatctt aaaaataccc aaaatagttg
1551 taccattatc cttactggtg agagtgtcaa aatacttggt tgtgatttct
1601 cgagtgaatt cattgaatac gcaaaaacct tgaaagtgca agctatttga
1651 gaatctttaa gtttgcagaa gaagaatttg ataaagatgg cggagcaaca
1701 gaaagctgct gaagagaagg ctcgtgttga ggctaggttg aaacaacagc
1751 ttgagcagca aagttcgaag ctggggagcg agaaagagtt tattcgggat
1801 gctgaggggt tgcagaaatc tctattggag cgttttcagg ccctgcagga
1851 cctaactgca aagagtattg caggctcatc catagttaat ggaggttggg
1901 aggcggacag aaaaaggttg aaggtgtctg acaaaatgaa gcttgatggt
1951 tcaaacatct ttacccgacc cacgctcgat gatcttcaaa agctgggttg
2001 gaaccctgaa gccaatcaag tggcaactgc tgaaaatctg gcaaaaataa
2051 gtgccaaact gaaagagctg ggcgttccac cggagcatat ggccaggaca
2101 ttctgggatg tggccatgta ctgcacggca gtcggtgcgt ccaggtatac
2151 taatccccaa ggttctatca attaccctga aggttccatc actagagatg
2201 caatctttgg tgtcataagg gaacagtgta ccctgaggca agtttgcagg
2251 agttttgctc ctatcatttg gaactatatg catgtaaata acatgccccc
2301 aactaattgg gcggagaagg gtttcaacaa tgatgtcaaa tttgctgcat
2351 tcgatttctt tgatttcgtg gagtgtcctg cttctattca gcccgcggac
2401 ggtttgatca gacgacctac atcggatgag tacatcgcct tcaacactca
2451 taagaagaat gctctggcta gagctgacag aaatagccga tacgcgagta
2501 atgatgcgtc tgttaccggt ggtatgttcg gttgtggagc caaggaaaat
2551 tggcgtaata atgcgtgcta agtgtgtgcg gttgctagta aaacctaaat
2601 aatgtataag ctagaaccta taaaatcaag tgtgttttaa tatattttta
2651 atgcttgt