Sequence of DPV Plum pox virus

Plum pox virus VAR-2 polyprotein gene, partial cds.

ACC No: AF357544

Dated: 2002-03-01 | Length: 836 | CRC: 1071379624

                !!NA_SEQUENCE 1.0
ID   AF357544   standard; genomic RNA; VRL; 836 BP.
XX
AC   AF357544;
XX
SV   AF357544.1
XX
DT   29-MAR-2001 (Rel. 67, Created)
DT   01-MAR-2002 (Rel. 70, Last updated, Version 2)
XX
DE   Plum pox virus VAR-2 polyprotein gene, partial cds.
XX
KW   .
XX
OS   Plum pox virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-836
RX   DOI; 10.1007/s007050200006.
RX   PUBMED; 11958455.
RA   Glasa M., Marie-Jeanne V., Moury B., Kudela O., Quiot J.B.;
RT   "Molecular variability of the P3-6K1 genomic region among geographically
RT   and biologically distinct isolates of Plum pox virus";
RL   Arch. Virol. 147(3):563-575(2002).
XX
RN   [2]
RP   1-836
RA   Glasa M., Marie-Jeanne V., Quiot J.B.;
RT   ;
RL   Submitted (08-MAR-2001) to the EMBL/GenBank/DDBJ databases.
RL   Virus-Vecteurs, ENSA-INRA, 2, place Viala, Montpellier 34060, France
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .836
FT                   /db_xref="taxon:12211"
FT                   /mol_type="genomic RNA"
FT                   /organism="Plum pox virus"
FT                   /isolate="VAR-2"
FT   CDS             <1. .>836
FT                   /codon_start=2
FT                   /db_xref="UniProtKB/TrEMBL:Q98XT0"
FT                   /note="encodes partial P3, 6K1, and start of CI protein"
FT                   /product="polyprotein"
FT                   /protein_id="AAK27229.1"
FT                   /translation="YLQELEQAWRELSWSERFSAILESQRWRKHIPKPFIPKDAADLGG
FT                   RYDISVRSLLGSQYKRLKDVVRRKRDDVVCYTHQSMGKLFCKAIGISTSFLPSTLKMFD
FT                   MLIIFGLLLSIGATCNSMINEHKHLKQVAADREDKKRFKRLQVLYTRLLEKIGCTPTAD
FT                   EFLEYVQGENPDLLKYAEDLIGDGQVVVHQSKRDSQANLERVVAFVALVMMLFDSERSD
FT                   GVYKILNKLKGVMGSIDQTVHHQSLDDVEDMLDEKKLTVDFVLQSNEVAPTVPFDS"
XX
SQ   Sequence 836 BP; 258 A; 157 C; 201 G; 220 T; 0 other;

AF357544  Length: 836  December 20, 2005 16:48  Type: N  Check: 6655  ..

       1  ttatctccag gagttggagc aggcttggag agaattaagt tggtcggaaa
      51  ggttctctgc aatcttggaa tcgcagcggt ggcgaaaaca tataccaaaa
     101  cctttcatcc cgaaagacgc agcagattta ggaggcaggt acgacatctc
     151  cgttcggtca ttacttggca gccaatacaa acgcctgaaa gacgtggttc
     201  ggcggaaaag agacgacgtt gtttgttaca cacaccagtc gatggggaag
     251  ctattctgca aagctatcgg aatttccaca agttttcttc caagcactct
     301  gaagatgttt gacatgctca tcatatttgg tctcctgctt tcaataggag
     351  ccacatgcaa ttcaatgatt aatgagcaca aacatttaaa gcaagttgct
     401  gccgatcgtg aagataagaa aagattcaag agattgcagg tcttgtacac
     451  gagattatta gaaaagattg ggtgcacacc aacagcggat gaatttcttg
     501  aatatgtgca aggtgagaac cctgatctat tgaaatatgc agaggacttg
     551  atcggagatg ggcaagttgt tgtgcatcaa agcaaaagag attcacaagc
     601  taatctggaa cgagtcgtag catttgtagc ccttgttatg atgctttttg
     651  attcggaacg gagtgatggt gtttacaaaa tcctcaataa gcttaaaggc
     701  gtcatgggaa gtattgatca aactgttcac catcaaagtt tggacgacgt
     751  tgaagacatg ttggacgaaa agaaattgac agtcgatttc gtcttgcaaa
     801  gtaatgaagt cgcaccaact gttccatttg actcaa