Sequence of DPV Taro bacilliform virus
Taro bacilliform virus complete genome.
ACC No: AF357836
Dated: 2005-04-15 | Length: 7458 | CRC: 498098158
!!NA_SEQUENCE 1.0
ID AF357836 standard; genomic DNA; VRL; 7458 BP.
XX
AC AF357836;
XX
SV AF357836.1
XX
DT 28-NOV-2002 (Rel. 73, Created)
DT 15-APR-2005 (Rel. 83, Last updated, Version 3)
XX
DE Taro bacilliform virus complete genome.
XX
KW .
XX
OS Taro bacilliform virus
OC Viruses; Retroid viruses; Caulimoviridae; Badnavirus.
XX
RN [1]
RP 1-7458
RX DOI; 10.1007/s00705-002-0969-1.
RX MEDLINE; 22607621.
RX PUBMED; 12721801.
RA Yang I.C., Hafner G.J., Dale J.L., Harding R.M.;
RT "Genomic characterisation of taro bacilliform virus";
RL Arch. Virol. 148(5):937-949(2003).
XX
RN [2]
RP 1-7458
RA Yang I.C., Hafner G.J., Liew S.C., Dale J.L., Harding R.M.;
RT ;
RL Submitted (08-MAR-2001) to the EMBL/GenBank/DDBJ databases.
RL School of Life Sciences, Queensland University of Technology, GPO Box 2434,
RL Brisbane, QLD 4001, Australia
XX
FH Key Location/Qualifiers
FH
FT source 1. .7458
FT /country="Papua New Guinea"
FT /db_xref="taxon:178354"
FT /mol_type="genomic DNA"
FT /organism="Taro bacilliform virus"
FT primer_bind 1. .17
FT /note="methionine tRNA binding site for minus strand
FT synthesis"
FT CDS 350. .790
FT /codon_start=1
FT /db_xref="InterPro:IPR010746"
FT /db_xref="UniProt/TrEMBL:Q8BEM1"
FT /note="ORF1"
FT /product="unknown"
FT /protein_id="AAN75638.1"
FT /translation="MAKKFEAAIKDWYDNSRRADLSYLDLATTTKPSASQLAHNLQVIF
FT DRLSLHSSVSIKEHYEVVSKLHSLEKSIEELKSELTTVKRALTSIQKEVFTHKPLTAQE
FT VQTLAQSLIKEPKQIEQQAVFLLKELKEQTAKIQALLHELKS"
FT CDS 790. .1224
FT /codon_start=1
FT /db_xref="UniProt/TrEMBL:Q8BEM0"
FT /note="ORF2"
FT /product="unknown"
FT /protein_id="AAN75639.1"
FT /translation="MSVPNSTYPGYIKSLEETKVLGDPSVGFSEIPTTAIGTATGFSTL
FT YKQNNTIINLLISLHKKVDSLSKKTDVDELATELSKLTIKDTPKVKAKTPLYVFKSPRL
FT ILEEERYKIGLPPTTTDWTWPVGHPFAPPPKTSTKASTSS"
FT CDS 1227. .6872
FT /codon_start=1
FT /db_xref="GOA:Q8BEL9"
FT /db_xref="HSSP:1Q5H"
FT /db_xref="InterPro:IPR000477"
FT /db_xref="InterPro:IPR001878"
FT /db_xref="InterPro:IPR001969"
FT /db_xref="InterPro:IPR002156"
FT /db_xref="InterPro:IPR003232"
FT /db_xref="InterPro:IPR008180"
FT /db_xref="UniProt/TrEMBL:Q8BEL9"
FT /note="ORF3; cleavage products: putative movement protein,
FT coat protein, aspartic protease, reverse transcriptase and
FT ribonuclease H"
FT /product="polyprotein"
FT /protein_id="AAN75640.1"
FT /translation="MSLAVRDRGSNPSTSSTVPSQQDQIRDYRNMQRVRHTAERAARRI
FT FPGRFNRTLESQINPEAEIRLSQQRRAAMVPAEVLYNTSPSTRNQKVYQHYSEERILCT
FT GQNQQLNLPFINESSYRALRESGQQHLHIGLIMIRVHPLHRRNAGTTALIVPRDIRWND
FT DRSIIGTMEIDLSAGSQIVYIAPNIMLSVEDFYRNIQLAIQTQGYENWNSAESNLLISR
FT ALIGRLTNDSFTGFQYNISNVAEYLHSHGVQAIEGQAHPRTLGNRWILQAPAPPRSLVP
FT QNVETTTLLDGNVSIRFSNYHQAPVNDTQDNSHPDIQEDENQFIGFLSDLGEEYELEYP
FT SFTPVHADEFIFIIINGEEIPDDFVSSFCSNFSPPPIPEPEPTAIEETAFTLEEQFNDL
FT DYPTLISMEKQLVQSSVTSAYNPPTEPLMGQVVYPPASAPRPQAETSSTSERFKNFRAK
FT PYSTPTIFLPPAYNQQGAILVLPDDIGLYEDTISRWESITLNMMNEKVWPSNEAKAKYM
FT ENLLGEMEKKTWIQWRTTYVSEYDALVQQSDETQNLLSQVRRIFLLQDPYQGSTAEQDQ
FT AYNDLERISCDNIKDLIPYLIQFRNLAAKSGRLFLGPELSEKLFRKMPPLIGKEIETAF
FT IAKHGNANITVMPRIHFAYHYLAELCKKAALQRSLKDLSFCNQIPLPGIYTKGNKKFGL
FT RKARTYKGKPHPTHVRVFKKAKYQRTKKCKCFICGEPGHFARECTKQRGNIVRATVHQE
FT LAIPDNFDVVSVDADESDSSGIYSYSENEAPLQEVNSFIHDENIFFLSDADEFESPQQH
FT LHETVNMLQSRSAYLPQVAVGEEKLNCSHIWLQDVDIPSDKHKCHTCRRDTQKHYRLEC
FT QKCKFLVCSLCTIPYLGITMQFRQKQKSQPENPNLVRELLEHAIFLEEKCKNQELLSET
FT QIERIVSSEKQVKFYGILPTKKSNKSAGYDLQSNIDIEIPPGKCTVISTGTFLQMPDNM
FT YGRLVERTSLAIQGITVQGGVIDPDFTGEIQIVLFNHNTAPYPVKKTYRLAQIIFEKFY
FT TPIFIQEPFTSTQQGSSNFGSTAKPLQITENIEVMSETVANQVAKSSVLPRLYSIQAHI
FT HIAPDIVISTTAIIDTGATVCCISEKIVPEAAKEQLNYKVNISGISSQQQIQHRLKRGT
FT LEIASNKYALPLCYIIELNDKDDFSMILGCNFFKHMGGGMRFEGPHVTFYKGITTLSTS
FT YANTGIDTEHEQITSTTSQSFKERFSPLMNELKAAGYIGEDPLKHWSKNKVTCKLDLKN
FT TEITIQDKPLRHITPALEQSYGRHVNALLMLKVIQPSKSRHRTMAFLVNSGTTVTADGK
FT EIKGKERMVFNYKALNDNTYKDQYSLPNIQLILKKVINSTIYSKFDLKSGFHQVAMDPD
FT SVEWTAFLVPQGLYEWLAMPFGLKNAPAVFQRKMDAVFKGCEKFLAVYIDDILVFSNNE
FT EDHAKHLVIMLQRCKEHGLVLSPTKMNIAVREVNFLGATIGSRKVKLQENIIKKILDFD
FT TEKLQSKKGLRSFLGILNYARNHIPNLGKIAGPLYSKTSIYGDIRFSASDWKLINEIKA
FT IVEKLPPLDYPPEQAYIIIESDGCMEGWGAICKWKLAEYDPKSSEQICAYASGKFSPIK
FT STIDAEITAAMEGLEAFKIHYLDKQKITLRTDCQAIISFCNKTSVNKPSRVRWLKFIDY
FT ITNTGIDVKFEHIDAKNNVLADTLSRLVNTLQDLPWLDEPHQDQTVSLMQEIEDAPLEI
FT KQRSLTCLQRLICRSFMEDSTEEAIHFLEDDKIEPTAESSTPITLDEFSRKRFQEHTDL
FT LEEFQLTLLQINLLEASLHERLMKCQSYATRDNFWGDWLPEARRDLLQIQLAKEIIEKV
FT REKLHSI"
XX
SQ Sequence 7458 BP; 2437 A; 1589 C; 1340 G; 2092 T; 0 other;
AF357836 Length: 7458 April 19, 2005 08:53 Type: N Check: 3056 ..
1 tggtatcaga gctatggtga tgttttctat ggctatggca gcgtaaactt
51 cttctgctca agagggaagt ctaccatgtc ttttatttgc tgatgcaact
101 tcatttaatt tgcctatatt ttgtttgata tatctcatta tttgtaagcc
151 tcgtacttac agtacagacc gataacataa ggtaagctaa ggtagcaggc
201 aaaagaggga acaaagtagc cgcaggagaa aggcgaagaa gtaccgtgag
251 tcttctaccc gaaacttact aagtgttatt tctatctggg atagtttagg
301 tcttggaaaa taatgcgacc ttacaattat atgatttata tcacatttta
351 tggcaaagaa atttgaagca gctattaaag actggtatga taactctcga
401 cgagcagatc tttcctatct tgacctagcc accactacaa aaccttctgc
451 atcacaatta gctcataatc tacaagtcat ttttgataga ttatccttac
501 attcttcagt ctccattaag gaacattacg aagtagttag caaacttcat
551 tctttggaaa aatctataga agaattaaag tctgaattga ctacggtcaa
601 aagggcttta acttctatcc aaaaagaagt tttcacccac aaacccctca
651 cagcacagga agtgcaaacc cttgcacaaa gtctgatcaa agaacctaag
701 caaatagaac agcaggccgt atttcttcta aaggagctta aagaacaaac
751 agcaaaaatt caagctttgc tccacgagct taaaagttga tgtctgtacc
801 taattccaca tacccagggt acatcaaaag tttagaagaa acaaaagtct
851 taggagatcc atctgtagga ttctctgaaa ttcctaccac tgctatcgga
901 accgctacag gtttttcaac tctttataag cagaacaata caatcatcaa
951 tctgcttata tctcttcata aaaaggttga tagcctctcc aaaaagacag
1001 acgtcgacga gttagccact gagttgtcca aactcacaat caaggatacc
1051 ccaaaggtta aggctaaaac tcctctatac gtcttcaaga gtccccgtct
1101 tatcctcgaa gaggaaagat ataaaatcgg ccttcctcct accactaccg
1151 attggacttg gcctgtagga catccttttg ctcctccacc aaaaacatcc
1201 acaaaggcat ccacctcttc ttaaagatgt ctttagcagt tcgtgatcgt
1251 ggttccaacc cttccacctc ttctacagtc cctagtcagc aggaccagat
1301 tcgggattat agaaacatgc aaagagttcg tcatacagcg gaaagagcag
1351 caaggagaat cttccctgga agattcaata gaactctgga atcacaaatc
1401 aatccagagg cagaaatccg tctttctcaa caaagacgag cagcaatggt
1451 cccagcagaa gtattataca atacttctcc atcaacaaga aatcagaaag
1501 tgtatcagca ctattctgaa gaaagaattc tttgtacagg acaaaatcag
1551 caattaaatt tgccatttat taatgaatct tcttacagag ccctcagaga
1601 atcaggtcaa cagcatcttc acataggcct gatcatgatt cgtgtacatc
1651 ctcttcatcg gcgaaatgca ggaacgacag ctcttattgt ccctcgagac
1701 ataagatgga atgatgacag atctatcatt ggcaccatgg agatagatct
1751 cagcgccgga tcccaaattg tttatattgc cccaaatatc atgctatctg
1801 ttgaagattt ttatcgcaac atacaacttg cgattcaaac tcagggctat
1851 gaaaactgga actctgccga gagtaacttg ctcatctctc gcgctcttat
1901 tggtcgtctg acaaacgaca gttttacagg attccagtac aatatctcta
1951 atgttgctga gtacttgcac agtcatggtg tgcaagctat tgaaggacaa
2001 gctcatccaa gaaccctcgg caatcgatgg atcctacaag caccagcacc
2051 accaaggtct ctcgttccac aaaacgtgga gaccaccact cttctggatg
2101 gtaatgtgtc tatacgtttc tccaattacc atcaagcacc agttaatgat
2151 actcaggata attctcatcc tgatatccaa gaagacgaaa accaattcat
2201 tggttttctt tctgatttgg gggaagaata tgaattggag tatccttctt
2251 tcactccagt tcatgcagat gaattcattt ttataatcat taatggggaa
2301 gaaattcccg atgattttgt ctcatctttt tgttccaatt tctctcctcc
2351 accaattcca gaaccagaac ccacagccat tgaagaaaca gcttttactt
2401 tggaagaaca attcaatgac ctggactatc ctaccctcat ttcaatggaa
2451 aaacaattag tccagtcttc agttacttca gcttacaacc cacccacaga
2501 acctcttatg ggtcaggtag tctatccacc agcatctgca cctagaccac
2551 aagctgaaac ttcttcaacc tctgaaagat tcaaaaattt cagagcaaag
2601 ccatatagta ccccgactat tttcctacct ccagcataca atcaacaagg
2651 ggctatatta gttcttcctg atgacattgg cttatatgaa gataccattt
2701 ctcgttggga gtccattact ctcaacatga tgaatgaaaa ggtttggcca
2751 tcaaatgaag caaaggccaa atatatggaa aatctcttag gagaaatgga
2801 gaagaagaca tggatacaat ggaggaccac atatgtatcc gaatatgatg
2851 ctttggtcca acaaagtgat gaaacacaga acctcctgtc tcaggtaagg
2901 aggatatttc tgctacaaga cccatatcaa ggatcaactg cggaacaaga
2951 tcaggcatat aatgatcttg aaagaatttc ttgtgataat attaaggatt
3001 taattcctta tctgattcag ttccgcaatt tagctgcaaa atctggacgc
3051 ttgttcttag gtccagaatt atctgaaaaa ttattcagaa aaatgccgcc
3101 tctaataggc aaagaaattg aaacagcatt catagcaaag catggtaatg
3151 caaacatcac tgttatgcct cgcattcatt ttgcttacca ttatcttgct
3201 gaattatgta aaaaggcagc attacagaga tcattgaagg atctcagctt
3251 ctgcaaccag attcctctcc caggaatcta tacaaaaggc aacaagaagt
3301 ttggtcttcg aaaggccaga acatacaaag gaaaaccaca tccaacacat
3351 gtacgggtat tcaaaaaggc aaaataccag cgtacaaaga agtgcaaatg
3401 ctttatatgt ggtgaaccag gacattttgc tcgagaatgc acaaagcaaa
3451 gaggaaatat tgtacgagca acagtacatc aagaactggc cataccagat
3501 aattttgatg ttgtttctgt ggatgcagat gaatctgaca gctctggcat
3551 ctacagttat tcggaaaatg aagctcctct gcaagaagta aattctttca
3601 ttcatgatga aaatatcttt ttcctatctg atgcagacga gtttgaaagc
3651 ccacaacagc atcttcatga aacggtaaat atgcttcaat ctagatctgc
3701 ttatttacct caagtagctg ttggagaaga aaaattgaat tgtagtcaca
3751 tttggctaca agatgttgat attccatctg ataagcacaa atgccacaca
3801 tgtagaagag acactcagaa acattacaga ctggaatgtc aaaaatgcaa
3851 attcttggtt tgctcactat gcacaattcc atatctcgga atcaccatgc
3901 aattcaggca aaagcaaaaa tctcagcctg aaaacccaaa cttagtccga
3951 gaattgttag aacatgccat ttttctagaa gaaaaatgca aaaatcaaga
4001 attactgtca gaaactcaga tagaaaggat agtcagttct gaaaaacaag
4051 tcaaatttta tggcatcctt cctacaaaaa agtccaacaa atctgctggg
4101 tatgacttac aatccaacat tgatatagaa atcccgccag gaaaatgtac
4151 agtcatttct actggaacct ttctacaaat gcctgacaac atgtatggta
4201 gacttgtaga aagaacatct ttggcaatac aggggattac agtacaagga
4251 ggagtcattg acccagactt cacaggagaa atacagattg ttctcttcaa
4301 tcataatact gctccttatc ctgtgaagaa aacttacaga ttggctcaaa
4351 ttatctttga gaaattttat actccaatct tcattcaaga acctttcact
4401 tcaactcaac aaggttcttc aaattttggc agtacagcta aacctctaca
4451 aatcacagaa aatatagagg ttatgtctga aacagttgca aatcaggttg
4501 caaaatctag tgtgctacca cgattatatt ccattcaagc acatattcat
4551 attgcaccag atattgttat ttctacaact gccatcattg atacaggagc
4601 aacagtctgt tgtatatctg aaaagatagt accagaagca gccaaagaac
4651 agctcaatta caaagttaac atttctggta tttcatctca acagcaaatt
4701 cagcatagac tgaaaagagg tacattagaa attgcatcaa ataaatatgc
4751 tctaccattg tgttatatca ttgaactcaa tgataaagat gatttttcta
4801 tgattcttgg atgcaatttc tttaaacata tggggggagg aatgaggttt
4851 gaaggacctc atgttacttt ttacaaagga attactacct tgagcacctc
4901 atatgcaaat actggtatcg atactgaaca tgaacaaatt accagtacaa
4951 cctctcagtc ttttaaagaa agattttctc ccttaatgaa tgaacttaaa
5001 gcagcaggct acattggaga agatcctctc aaacattggt ctaaaaacaa
5051 agtcacatgc aaattagacc tgaagaatac agagattact attcaggata
5101 agcccttaag acacatcaca cctgctctgg aacaatcata tggtcgtcat
5151 gttaatgctc tactcatgct taaggttatt caaccttcca aaagtagaca
5201 cagaacaatg gctttcctag taaactctgg caccactgtt acagctgatg
5251 gaaaagaaat caaaggtaaa gagcgtatgg tctttaatta caaagccctc
5301 aatgacaaca cctacaaaga ccaatactca ttaccaaata ttcagcttat
5351 tttgaaaaag gtgatcaata gcactatcta ttctaaattt gatctgaaat
5401 ctggttttca ccaagttgct atggatcccg attctgtgga atggacagct
5451 ttcctagttc cacaaggttt atatgaatgg ctggcaatgc cttttggcct
5501 caaaaatgct ccagccgtat ttcaaagaaa aatggatgca gtattcaaag
5551 ggtgtgaaaa attcctcgca gtctatattg atgatattct ggtattttca
5601 aacaatgagg aagatcatgc aaaacacctg gtcatcatgc ttcagcggtg
5651 taaagaacat ggtcttgttc tttcacctac aaaaatgaat attgcagtta
5701 gagaagttaa ttttcttgga gccactattg gcagcagaaa agttaaactc
5751 caagaaaata ttatcaagaa gatccttgac tttgatacag agaaacttca
5801 atcaaaaaag ggtcttcgtt catttctggg aattcttaac tatgcccgaa
5851 atcatattcc aaatctcggg aaaatagccg gacctctcta ttccaaaact
5901 tccatatatg gtgatatcag attttcagca tctgattgga agttaatcaa
5951 tgaaatcaag gctattgttg agaagctccc accacttgat tatcctccag
6001 aacaagccta catcattatt gaatctgatg gttgtatgga aggatggggc
6051 gctatttgta aatggaagct cgcagaatat gaccccaagt caagtgaaca
6101 aatttgtgcg tatgctagtg gtaaattctc tccaatcaaa tccactatcg
6151 acgcagaaat tactgccgcc atggaagggt tagaagcatt caagatccat
6201 tacttggata aacaaaaaat aaccctccgc actgattgcc aggcaatcat
6251 ctcattctgc aacaagactt cagtcaacaa gccttcacgg gttagatggt
6301 tgaagttcat tgattatatt actaacactg gaattgatgt taaatttgaa
6351 catattgatg ctaaaaataa tgtcttagct gacactctgt ccaggttagt
6401 taacactttg caggatttgc catggctaga tgaacctcat caggatcaaa
6451 cagtctccct gatgcaggaa attgaagatg cacctcttga aatcaagcag
6501 cgttctttaa cctgcttaca gagactgatc tgtagaagct tcatggaaga
6551 ttctacagaa gaagctattc acttcctcga agatgataag atcgagccaa
6601 cagctgagtc atcaacccca attactttgg atgaattttc aagaaaaaga
6651 ttccaagaac atacagatct cttagaagaa tttcaattaa ctttgcttca
6701 aattaatctt cttgaagcat ctcttcatga acgattaatg aaatgccaaa
6751 gttatgcaac gagagataat ttctggggag attggctgcc tgaagctcgc
6801 agagatcttt tgcaaattca actagccaaa gaaatcatcg agaaggttcg
6851 tgaaaagctt cactctatct agataggatt ctttgtgtgt gagtggcgca
6901 cttgcgcata atgtagtaag gaattattgt acttttacgc tggacgccac
6951 taggctccat gctttctgta atgtcacatc acttttacga attgagcctc
7001 ggggagccgt tcgtacaaag tagatgcttt tctagtcaca tctgactttt
7051 ctaaaagcag atgccatcaa ctttattcga gttgagcctc ggggagccgc
7101 tcgtttaaag atgctctttt gaaaatgaca gcgcgtggtg cgatgtcatt
7151 ctcacctttt ctttaatgcg tcggccaccg actgcattat tgagattctc
7201 ttatcccttt gccacctcat cggttgcatt attgggattt cgtatcgagt
7251 cgagggacga ggcctccact actcctataa aaggacctca acccctcaga
7301 agaacggcaa gccggaaaca ccgaacttcc cattcttctc ttgagtcttt
7351 cctttgagct tgagcttgtg tgtaatcttt catagtttct aagtctccga
7401 agaacgagca ccgtctcgtg aaggagccga tccttttcca accacacttt
7451 ttctacct