Sequence of DPV Soil-borne wheat mosaic virus

Soil-borne wheat mosaic virus strain NY cystein-rich protein gene, complete cds.

ACC No: AF361642

Dated: 2003-05-29 | Length: 1029 | CRC: 1462720271

                !!NA_SEQUENCE 1.0
ID   AF361642   standard; genomic RNA; VRL; 1029 BP.
XX
AC   AF361642;
XX
SV   AF361642.1
XX
DT   30-JUN-2002 (Rel. 72, Created)
DT   29-MAY-2003 (Rel. 75, Last updated, Version 3)
XX
DE   Soil-borne wheat mosaic virus strain NY cystein-rich protein gene, complete
DE   cds.
XX
KW   .
XX
OS   Soil-borne wheat mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Furovirus.
XX
RN   [1]
RP   1-1029
RX   MEDLINE; 21954635.
RX   PUBMED; 11958460.
RA   Koenig R., Bergstrom G.C., Gray S.M., Loss S.;
RT   "A New York isolate of Soil-borne wheat mosaic virus differs considerably
RT   from the Nebraska type strain in the nucleotide sequences of various coding
RT   regions but not in the deduced amino acid sequences";
RL   Arch. Virol. 147(3):617-625(2002).
XX
RN   [2]
RP   1-1029
RA   Koenig R.;
RT   ;
RL   Submitted (17-MAR-2001) to the EMBL/GenBank/DDBJ databases.
RL   Institut fuer Pflanzenvirologie, Mikrobiologie und biologische Sicherheit,
RL   Biologische Bundesanstalt fuer Land- und Forstwirtschaft, Messeweg 11,
RL   Braunschweig D38104, Germany
XX
DR   SPTREMBL; Q8JV06; Q8JV06.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1029
FT                   /db_xref="taxon:28375"
FT                   /mol_type="genomic RNA"
FT                   /organism="Soil-borne wheat mosaic virus"
FT                   /strain="NY"
FT                   /segment="RNA2"
FT   CDS             117. .641
FT                   /codon_start=1
FT                   /db_xref="SPTREMBL:Q8JV06"
FT                   /note="ORF3"
FT                   /product="cystein-rich protein"
FT                   /protein_id="AAM69279.1"
FT                   /translation="MSTVGFHTCASCVDGPKSIKCVSKYRISVYKTLGLDVVKCRLPAD
FT                   CGVNCGMPAAFILEQGHPKLTMDGYCGEKHRGYVLSGAWRHAQLRSLNSELDALEAREE
FT                   SLRAQIKALSVGDHCPAVLAYVPKKLTKLKAEVHDVTGKKQMCITGLVDVMDSALVRLA
FT                   PDSPPKKISSL"
XX
SQ   Sequence 1029 BP; 255 A; 202 C; 242 G; 330 T; 0 other;

AF361642  Length: 1029  September 11, 2003 13:48  Type: N  Check: 4603  ..

       1  gtgtgggtag tatgaagatg aaaatcgcta gtaagcctat ggcgtcctag
      51  cgtgttgttt ttaatactac ttcaccaatc acaaattact tcctgggttg
     101  ctttttattt cccactatgt ctactgttgg tttccacact tgcgcgagtt
     151  gtgttgatgg acccaagtct attaaatgtg ttagtaagta tcgtattagc
     201  gtgtacaaga ctcttggtct tgatgttgtt aagtgtcgtc ttcctgcaga
     251  ttgtggcgtt aattgtggta tgcctgcggc ttttatttta gagcagggtc
     301  atcctaagct tactatggat ggttactgtg gtgagaaaca cagaggttat
     351  gtcttatctg gtgcgtggcg tcacgctcaa ctccgttccc tcaattctga
     401  gttagatgca ttggaggcta gggaagagtc ccttcgggct cagattaaag
     451  ctctcagcgt tggcgatcat tgccccgctg ttctcgctta cgtccctaag
     501  aaactgacta agttgaaagc ggaggttcac gatgttactg gaaagaagca
     551  gatgtgcatt acaggtttag tcgatgtaat ggattctgcg ttggtgcgct
     601  tagcacctga ctcaccacca aagaagatat cctctctgtg atgttctgta
     651  tttcctttgt gctgtctttc tattactagt ttgtgtctac tggagtaggt
     701  aaccaggata aagaacccga acgaaaatct tgcaaaaata tttattacta
     751  atataaataa atgggcaagt ctgtcacttt ggctatcaga gttttcatac
     801  tctataaact atgacgtggt cttcacgata gaagatggtg cttgttattt
     851  cacctaaatc gacataacga aagggcgttc tgcagtacgt ttaaactgta
     901  ggttccaacc tctagttcct attgatgtaa ttgaaaaaag atcaatgggt
     951  aattatgatg aggtgcgact ggtggtcgcg gttgctatca cacagcaact
    1001  aggaggggtt caattccccc cccatccgg