Sequence of DPV Turnip mosaic virus

Turnip mosaic virus polyprotein gene, partial cds.

ACC No: AF381451

Dated: 2001-06-08 | Length: 1383 | CRC: -224849526

                !!NA_SEQUENCE 1.0
ID   AF381451   standard; RNA; VRL; 1383 BP.
XX
AC   AF381451;
XX
SV   AF381451.1
XX
DT   08-JUN-2001 (Rel. 68, Created)
DT   08-JUN-2001 (Rel. 68, Last updated, Version 1)
XX
DE   Turnip mosaic virus polyprotein gene, partial cds.
XX
KW   .
XX
OS   Turnip mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1383
RA   Dombrovsky A., Huet H., Raccah B.;
RT   "TuMV-Israeli isolate helper component";
RL   Unpublished.
XX
RN   [2]
RP   1-1383
RA   Dombrovsky A., Huet H., Raccah B.;
RT   ;
RL   Submitted (15-MAY-2001) to the EMBL/GenBank/DDBJ databases.
RL   Virology, A.R.O., Volcani Center, P.O.Box 6, Bet Dagan 50250, Israel
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1383
FT                   /country="Israel"
FT                   /db_xref="taxon:12230"
FT                   /note="aphid transmissible"
FT                   /organism="Turnip mosaic virus"
FT   mat_peptide     <1. .63
FT                   /product="P1 protein"
FT   CDS             <1. .>1383
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /protein_id="AAK59301.1"
FT                   /translation="GKLYDARIKVTKMMSHKIVHFSAAGTNFWKGFDRCFLAYRSNDRE
FT                   HTCYTGLDVTECGEVAALMCLAMFPCGKITCPDCVTDSELVQGQASAPNIKQRLAQLRE
FT                   VIKSSYPRFKHAVQILDRYEQSLNGENANYQDFAEIQSLTDGMEKAAFPHANKLNAILI
FT                   KGATATGEEYEQATKHLLEITRYMKNRTENIEKGSLKSFRNKISQKAHINPTLMCDNQL
FT                   DKNGNFIWGERGYHAKRFFSNYFEIIDPAIGKLIIPTNFEVLREQMRGEPVDPHPITVE
FT                   CVSKSQGDFVHACCCVTTESGDPVLSEIKMPTKHHLGIGNSGDPKYVDLPEIEENKMYI
FT                   AKEGYCYINIFLAMLVNVKESQAKEFTKVVRDKLVGELGKWPSLLDVATACYFLKVFYP
FT                   DVANAELPRMLVDHKTKIIHVVDSYGSLSTGYHILKTNTVEQLIKFTRHNLESSLKHYR
FT                   VGG"
FT   mat_peptide     64. .1383
FT                   /note="HC-pro"
FT                   /product="helper component protease"
XX
SQ   Sequence 1383 BP; 468 A; 268 C; 316 G; 331 T; 0 other;

AF381451  Length: 1383  December 21, 2001 15:32  Type: N  Check: 6490  ..

       1  ggtaaattgt acgacgccag gattaaagtt acaaagatga tgagccataa
      51  gattgtgcac tttagtgcgg caggaacaaa cttctggaaa ggctttgaca
     101  gatgctttct agcataccgc agtaacgatc gagaacacac atgttacaca
     151  ggacttgatg tcaccgagtg cggagaagta gcagctttga tgtgtcttgc
     201  aatgttcccc tgcggaaaaa taacctgccc tgactgtgtt acggatagcg
     251  agttggtgca aggccaggca agtgcaccta atataaaaca acgattggct
     301  caactgaggg aagtgattaa gtcaagttat ccgcggttta aacacgcagt
     351  gcagatactg gataggtatg aacaatcact caatggtgaa aatgcaaatt
     401  accaagactt tgcagaaatt caaagtctga ctgatggaat ggaaaaagca
     451  gcgtttccac atgcgaataa attgaacgcc atattaatca aaggagccac
     501  ggcaacaggc gaggagtatg aacaagcaac aaagcacttg ctagaaatca
     551  cccgatatat gaagaaccgc actgaaaaca ttgaaaaggg atcacttaaa
     601  tcctttagaa ataagatatc ccagaaggca cacatcaatc caacattaat
     651  gtgtgataat caactcgata agaatggcaa cttcatatgg ggtgagcgag
     701  gttatcatgc gaagagattc tttagcaatt attttgaaat aattgaccca
     751  gctattggta agctcataat cccgacaaac tttgaagtcc tgagagagca
     801  gatgagaggg gaacctgtag atccacatcc aatcacggtg gagtgtgtga
     851  gtaagtcaca aggtgacttc gttcacgcat gttgttgcgt aactactgag
     901  tcaggtgatc cagtattgtc tgaaatcaaa atgccaacga aacaccactt
     951  agggatcgga aatagtggtg atccaaaata tgttgatctt ccagagattg
    1001  aagagaacaa aatgtacata gccaaggagg gctactgcta tatcaacata
    1051  ttcctcgcaa tgctcgtgaa cgtcaaggag tcacaggcaa aagaattcac
    1101  caaagttgtt agagacaaat tggttggtga actaggcaaa tggccatcgt
    1151  tgttagatgt tgcaacagct tgttatttct tgaaagtctt ttacccagac
    1201  gtcgctaatg ccgaattacc aaggatgctg gtggatcaca aaacgaagat
    1251  aattcatgtc gtcgactcat atgggtcatt atcaacggga taccacatct
    1301  tgaagacgaa cacagttgag caacttatca agtttacaag acacaatctt
    1351  gaatcaagct taaaacacta ccgcgttgga gga