Sequence of DPV Potato virus Y

Potato virus Y N 27 polyprotein gene, P1 protease region, partial cds.

ACC No: AF401606

Dated: 2002-05-26 | Length: 1056 | CRC: -744908960

                !!NA_SEQUENCE 1.0
ID   AF401606   standard; RNA; VRL; 1056 BP.
XX
AC   AF401606;
XX
SV   AF401606.1
XX
DT   27-AUG-2001 (Rel. 68, Created)
DT   26-MAY-2002 (Rel. 71, Last updated, Version 2)
XX
DE   Potato virus Y N 27 polyprotein gene, P1 protease region, partial cds.
XX
KW   .
XX
OS   Potato virus Y
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1056
RX   MEDLINE; 22004084.
RX   PUBMED; 12008009.
RA   Nie X., Singh R.P.;
RT   "Probable geographical grouping of PVY(N) and PVY(NTN) based on sequence
RT   variation in P1 and 5'-UTR of PVY genome and methods for differentiating
RT   North American PVY(NTN)";
RL   J. Virol. Methods 103(2):145-156(2002).
XX
RN   [2]
RP   1-1056
RA   Nie X., Singh R.P.;
RT   ;
RL   Submitted (24-JUL-2001) to the EMBL/GenBank/DDBJ databases.
RL   Potato Research Centre, Agriculture and Agri-Food Canada, P.O. Box 20280,
RL   850 Lincoln Road, Fredericton, New Brunswick E3B 4Z7, Canada
XX
DR   SPTREMBL; Q91HT6; Q91HT6.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1056
FT                   /db_xref="taxon:12216"
FT                   /note="from North America"
FT                   /organism="Potato virus Y"
FT                   /strain="N"
FT                   /isolate="N 27"
FT   CDS             154. .>1056
FT                   /codon_start=1
FT                   /db_xref="SPTREMBL:Q91HT6"
FT                   /product="polyprotein"
FT                   /protein_id="AAK95177.1"
FT                   /translation="MATYMSTIQFGSIECKLPYSPAPFELVAREREVSTITDPFAGLEM
FT                   QLSARLRRQEFATVRTSKSGTCMYRYKTDVQIAHIQKKREEREREEHNFQMAAPSVVSK
FT                   ITIAGGEPPSKLESQVQRGVIHTTPRMRTVKTYHTPKLPEKQMNHLIKQVKQIMSTKGG
FT                   SVQLISKKSTRVQYKEVLGAHRAVVCTAHMRGLRKRVDFQCDKWTVMCLKHLARTDKWT
FT                   NQVRATDLRKGDSGVILSNTNLKGYFGRSSEGLFIVRGSHEGKIYDARSKVTQGVLDSM
FT                   VQFSNAESFWKGLDGNWAQM"
FT   mat_peptide     154. .978
FT                   /product="P1 protease"
XX
SQ   Sequence 1056 BP; 334 A; 220 C; 242 G; 260 T; 0 other;

 AF401606  Length: 1056  June 18, 2002 10:22  Type: N  Check: 2497  ..

       1  cgcaaaaaca ctcacaaaag ctttcaattc taactcaagc aatttgttaa
      51  gtttcaactt tgatctccgt cgtacaaacc gtttcaactt cagtgtaagt
     101  tctcgtaact caatagttta tttcaaactc tctcaaatag taacatacca
     151  gccatggcaa cttacatgtc aacgattcaa ttcggttcca ttgaatgcaa
     201  acttccatac tcacccgccc cttttgagct agttgcgagg gaacgagaag
     251  tttcaaccat cactgacccc ttcgcaggtt tggagatgca gcttagtgcg
     301  cgactacgaa ggcaagagtt tgcgactgtc cgtacatcca agagtggtac
     351  ctgcatgtat cgatacaaga ctgatgtcca gattgcgcac atccaaaaga
     401  agcgcgagga aagagaaaga gaagaacaca acttccaaat ggctgcaccg
     451  agtgttgtgt cgaagattac tattgctggt ggagagccac cttcgaaact
     501  tgaatcacaa gtgcagaggg gtgtcatcca cacaactcca agaatgcgta
     551  cagtgaaaac atatcacacg ccaaagttgc cagagaaaca aatgaaccat
     601  cttatcaagc aggtaaagca aatcatgtca actaaaggag ggtctgttca
     651  actgattagc aagaaaagta cccgtgttca atataaagaa gttttgggag
     701  cacatcgcgc agtcgtttgc actgcacata tgagaggttt acgaaagaga
     751  gtagactttc agtgtgataa gtggactgtt atgtgtctga agcatctcgc
     801  aaggacggac aagtggacta accaagttcg tgctactgat ctacgaaagg
     851  gcgatagtgg agttatattg agtaatacta atctcaaagg atactttggg
     901  agaagttcgg agggtctatt tatagtgcgt ggatcgcatg aaggaaaaat
     951  ctatgatgcg cgttccaagg ttacacaagg agttctagac tcaatggttc
    1001  agttctcaaa cgctgaaagc ttctggaagg gattggacgg caattgggca
    1051  caaatg