Sequence of DPV Infectious salmon anemia virus

Infectious salmon anemia virus segment 6 putative HA protein (HA) gene, complete cds.

ACC No: AF404342

Dated: 2002-01-25 | Length: 1323 | CRC: -321703176

                !!NA_SEQUENCE 1.0
ID   AF404342   standard; RNA; VRL; 1323 BP.
XX
AC   AF404342;
XX
SV   AF404342.1
XX
DT   25-JAN-2002 (Rel. 70, Created)
DT   25-JAN-2002 (Rel. 70, Last updated, Version 1)
XX
DE   Infectious salmon anemia virus segment 6 putative HA protein (HA) gene,
DE   complete cds.
XX
KW   .
XX
OS   Infectious salmon anemia virus
OC   Viruses; ssRNA negative-strand viruses; Orthomyxoviridae;
OC   unclassified Orthomyxoviridae.
XX
RN   [1]
RP   1-1323
RX   PUBMED; 11807235.
RA   Clouthier S.C., Rector T., Brown N.E., Anderson E.D.;
RT   "Genomic organization of infectious salmon anaemia virus";
RL   J. Gen. Virol. 83(Pt 2):421-428(2002).
XX
RN   [2]
RP   1-1323
RA   Clouthier S.C., Rector T., Brown N.E., Anderson E.D.;
RT   ;
RL   Submitted (01-AUG-2001) to the EMBL/GenBank/DDBJ databases.
RL   Biochemistry, Microbiology and Molecular Biology, University of Maine, 5735
RL   Hitchner Hall, Orono, ME 04469, USA
XX
DR   SPTREMBL; Q8V3U0; Q8V3U0.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1323
FT                   /country="Canada"
FT                   /db_xref="taxon:55987"
FT                   /note="segment: 6"
FT                   /virion
FT                   /organism="Infectious salmon anemia virus"
FT                   /isolate="CCBB"
FT   CDS             8. .1192
FT                   /codon_start=1
FT                   /db_xref="SPTREMBL:Q8V3U0"
FT                   /gene="HA"
FT                   /product="putative HA protein"
FT                   /protein_id="AAL67958.1"
FT                   /translation="MARFIILFLLLAPVYSRLCLRNHPDTTWIGDSRSDQSRVNQQSLD
FT                   LVTNFKGILQAKNGNGLMKQMSGRFPSDWYQPTTKYRILYIGTNDCTEGPNDVIIPTSM
FT                   TLDNVARDLYLGACRGDVRVTPTFVGAAELGLIGRTDALTEFSVKVLTFNNPTIVVVGL
FT                   NGMSGIYKVCIAASSGNVGGVNLVNGCGYFSAPLRFDNFKGQIYVSDTFEVRGTKNKCV
FT                   ILRSSSNAPLCTHIKRNIELDEYVDTPNTGGVYPSDGFDSLHGSASIRTFLTEALTCPG
FT                   VDWDRIDAASCEYDSCPKLVKEFDQTGLGNTDTQIMRELEAQKEMIGKLGRNITDVNNR
FT                   VDAIPPQLSNIFISMGVAGFGIALFLAGWKACVWIAAFMYKSRGRNPPANLSVA"
XX
SQ   Sequence 1323 BP; 404 A; 257 C; 306 G; 356 T; 0 other;

 AF404342  Length: 1323  October 1, 2002 09:16  Type: N  Check: 292  ..

       1  agcaaagatg gcacgattca taattttatt cctactgttg gcgcctgttt
      51  acagtcgtct atgtcttaga aaccatcctg acaccacctg gataggtgac
     101  tcccgaagcg atcaatcaag ggtgaaccaa cagtctcttg atctggttac
     151  aaacttcaag ggaattctac aagccaagaa cgggaatggt ctcatgaagc
     201  agatgagcgg aaggttccca agtgattggt accaacctac tacaaagtat
     251  aggattctat acattggtac aaacgactgc actgagggcc ctaacgacgt
     301  gatcataccg acgtcaatga cactagacaa tgtggcaagg gacctgtacc
     351  tgggagcatg tcgaggagat gtaagagtga caccaacctt cgtgggagca
     401  gctgagcttg gactgattgg gagaacagat gccttaacag aattttctgt
     451  aaaggtgctg actttcaaca accctactat tgtagtagtt ggactaaatg
     501  gaatgtcagg aatctacaag gtctgcattg ctgcctcttc tggaaacgta
     551  ggcggagtca acttggtgaa cggatgcgga tacttcagcg ctcctctgag
     601  attcgacaac ttcaaaggac agatctacgt gtcagacacc tttgaagtca
     651  gaggaacaaa gaacaaatgt gtcatactta gatcttctag caatgctcct
     701  ttgtgtacac atatcaaaag aaacattgag ttggatgagt acgttgacac
     751  accaaacact gggggcgtat atccttctga tgggtttgat tctcttcacg
     801  gctctgcttc gattagaact tttttaacag aggcactgac atgtccaggt
     851  gtagattggg acagaattga tgcagcttca tgcgagtatg acagttgtcc
     901  taaacttgtg aaagaatttg accaaacagg gctcggaaac acagatactc
     951  aaataatgag agagctagaa gcacaaaagg agatgattgg taaacttggc
    1001  agaaacatta cagacgtaaa caacagagta gatgctattc caccacagct
    1051  tagcaacatc ttcatctcta tgggagtggc aggttttggg atagcactgt
    1101  ttctagcagg gtggaaggct tgtgtttgga tagcagcttt catgtataag
    1151  tctagaggta gaaacccacc tgcaaatctg tctgttgctt gatactaaga
    1201  caaacaaagt tttcaaataa tcaaatgttt tctaatgtaa tgtaaaattc
    1251  aaatcgtatg tgatattatt attttgaaga cgttcttgat gttgtacgtt
    1301  tacagaaaag tgcatttttt act