Sequence of DPV Infectious salmon anemia virus

Infectious salmon anemia virus segment 3 putative nucleocapsid protein (NP) gene, complete cds.

ACC No: AF404345

Dated: 2002-01-25 | Length: 2046 | CRC: 2046776886

                !!NA_SEQUENCE 1.0
ID   AF404345   standard; RNA; VRL; 2046 BP.
XX
AC   AF404345;
XX
SV   AF404345.1
XX
DT   25-JAN-2002 (Rel. 70, Created)
DT   25-JAN-2002 (Rel. 70, Last updated, Version 1)
XX
DE   Infectious salmon anemia virus segment 3 putative nucleocapsid protein (NP)
DE   gene, complete cds.
XX
KW   .
XX
OS   Infectious salmon anemia virus
OC   Viruses; ssRNA negative-strand viruses; Orthomyxoviridae;
OC   unclassified Orthomyxoviridae.
XX
RN   [1]
RP   1-2046
RX   PUBMED; 11807235.
RA   Clouthier S.C., Rector T., Brown N.E., Anderson E.D.;
RT   "Genomic organization of infectious salmon anaemia virus";
RL   J. Gen. Virol. 83(Pt 2):421-428(2002).
XX
RN   [2]
RP   1-2046
RA   Clouthier S.C., Rector T., Brown N.E., Anderson E.D.;
RT   ;
RL   Submitted (01-AUG-2001) to the EMBL/GenBank/DDBJ databases.
RL   Biochemistry, Microbiology and Molecular Biology, University of Maine, 5735
RL   Hitchner Hall, Orono, ME 04469, USA
XX
DR   SPTREMBL; Q8V3T7; Q8V3T7.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .2046
FT                   /country="Canada"
FT                   /db_xref="taxon:55987"
FT                   /note="segment: 3"
FT                   /virion
FT                   /organism="Infectious salmon anemia virus"
FT                   /isolate="CCBB"
FT   CDS             49. .1899
FT                   /codon_start=1
FT                   /db_xref="SPTREMBL:Q8V3T7"
FT                   /gene="NP"
FT                   /product="putative nucleocapsid protein"
FT                   /protein_id="AAL67961.1"
FT                   /translation="MADKGMTYSFDVRDNTLVVRRSTATKSGIKISYREDRGTSLLQKA
FT                   FAGTEDEFWVELDQDVYVDKKIREFLVEEKMKDMSTRVSGAVAAAIERSVEFDNFSKEA
FT                   AANIEMAGVDDEEAGGSGLVDNRRKNKGVSNMAYNLSLFIGMVFPALTTFFSAILSEGE
FT                   MSIWQNGQAIMRILALADEDGKRQTRTGGQRVDMADVTKLNVVTANGKVKQVEVNLNDL
FT                   KAAFRQSRPKRSDYRKGQGSKATESSISNQCMALIMKSVLSADQLFAPGVKMMRTNGFN
FT                   ASYTTLAEGANIPSKYLRHMRNCGGVALDLMGMKRIKNSPEGAKSKIFSIIQKKVRGRC
FT                   RTEEQRLLTSALKISDGENKFQRIMDTLCTSFLIDPPRTTKCFIPPISSLMMYIQEGNS
FT                   VLAMDFMKNGEDACKICREAKLKVGVNSTFTMSVARTCVAVSMVATAFCSADIIENAVP
FT                   GSERYRSNIKANTTKPKKDSTYTIQGLRLSNVRYEARPETSQSNTDRSWQVNVTDSFGG
FT                   LAVFNQGAIREMLGDGTSETTSVNVRALVKRILKSASERSARAVKTFMVGEQGKSAIVI
FT                   SGVGLFSIDFEGVEEAERITDMTPEIEFDEDDEEEEDIDI"
XX
SQ   Sequence 2046 BP; 721 A; 373 C; 504 G; 448 T; 0 other;

AF404345  Length: 2046  October 1, 2002 09:16  Type: N  Check: 7092  ..

       1  agcaaagatt gctcaaatcc caaaaataat acagaaaacg tataagagat
      51  ggccgataaa ggtatgactt attcttttga tgtcagagac aacaccttgg
     101  ttgtaagaag atctaccgct actaaaagtg gcattaagat ctcctacaga
     151  gaggatcgag gaacatcact tctccaaaag gcattcgccg ggacagaaga
     201  tgaattctgg gtggagttag atcaagatgt ctacgttgac aaaaagatta
     251  gagaattcct ggtagaagag aaaatgaagg acatgagcac aagagtgtct
     301  ggggcagtgg cagcagcaat tgaaagatca gttgaatttg acaatttctc
     351  aaaagaagca gcagctaaca ttgaaatggc tggtgtagat gatgaagaag
     401  ctggaggaag tggtctggta gacaacagaa ggaagaacaa aggggtctca
     451  aacatggcct acaatctgtc tctattcata gggatggtgt ttcctgctct
     501  cactactttc ttcagtgcta tcctatcaga aggtgaaatg agcatctggc
     551  aaaatggaca agcaatcatg agaattctgg cactggcaga tgaagacgga
     601  aagagacaaa caagaacagg aggacagagg gtggacatgg ctgatgtaac
     651  caagctgaac gtagtcacgg ctaacggaaa agtcaagcaa gttgaagtaa
     701  acttgaacga tctcaaagca gcattcaggc agagtagacc taaaagatcg
     751  gactacagaa aagggcaagg ttccaaggct acagaatcaa gcatctccaa
     801  ccaatgtatg gcactgatta tgaaatctgt gctgtcagca gaccaacttt
     851  ttgctccggg agtgaagatg atgaggacga acggtttcaa tgcgtcgtac
     901  acaacactgg cagaaggggc aaacattccg agcaagtacc taagacacat
     951  gaggaactgc ggaggagtag ctctggacct gatgggaatg aagaggatca
    1001  aaaactcacc tgaaggagcc aagtctaaga tcttttccat catccagaag
    1051  aaagtaagag gaagatgtcg cacagaggag caacgcctcc tgactagcgc
    1101  actgaaaatc agcgacggtg aaaacaagtt ccagagaatc atggacactc
    1151  tatgtacaag cttcctgatt gaccctccaa gaactaccaa atgcttcatt
    1201  ccacctattt ccagtctcat gatgtacatc caagaaggca actctgtact
    1251  ggcaatggat ttcatgaaaa acggagagga cgcctgcaag atctgcagag
    1301  aagccaaact gaaagtgggg gtaaacagta cgttcacaat gtcagtagct
    1351  agaacatgcg ttgcagtgtc aatggttgca acagcttttt gttctgcaga
    1401  tatcatcgag aatgcagtgc ctggttccga aaggtacaga tccaacatca
    1451  aggctaacac aaccaaacca aaaaaggact ccacttacac aattcaagga
    1501  cttagattgt ctaacgtgag gtatgaagca agacctgaaa catcacaaag
    1551  caacacagac agaagttggc aagtgaacgt gactgacagc ttcggaggac
    1601  ttgctgtgtt caaccaaggg gcaattagag aaatgctagg agacggaaca
    1651  tcagagacaa ctagtgtgaa cgtcagagcc ctggtgaaga gaattctgaa
    1701  atcagcttca gagaggagtg caagagctgt aaagacattt atggtgggag
    1751  aacaagggaa atcagctatt gttatctctg gtgtgggact gttctctatt
    1801  gactttgaag gggtagagga agcggaaaga ataactgaca tgacacctga
    1851  aattgagttt gacgaggacg acgaggaaga ggaagacatt gacatttaga
    1901  gtgacaatta tgtaacttcc taattaccct atattgtttg aatatataat
    1951  gaaactattg tgtgttaaag gttgtgggtt tgattattaa atttaaattg
    2001  aaacggtatt gacgatattt acaaaaaaaa aaaaaaaaaa aaaaaa