Sequence of DPV Infectious salmon anemia virus

Infectious salmon anemia virus segment 2 putative PB1 protein (PB1) gene, complete cds.

ACC No: AF404346

Dated: 2002-01-25 | Length: 2185 | CRC: -1608567154

                !!NA_SEQUENCE 1.0
ID   AF404346   standard; RNA; VRL; 2185 BP.
XX
AC   AF404346;
XX
SV   AF404346.1
XX
DT   25-JAN-2002 (Rel. 70, Created)
DT   25-JAN-2002 (Rel. 70, Last updated, Version 1)
XX
DE   Infectious salmon anemia virus segment 2 putative PB1 protein (PB1) gene,
DE   complete cds.
XX
KW   .
XX
OS   Infectious salmon anemia virus
OC   Viruses; ssRNA negative-strand viruses; Orthomyxoviridae;
OC   unclassified Orthomyxoviridae.
XX
RN   [1]
RP   1-2185
RX   PUBMED; 11807235.
RA   Clouthier S.C., Rector T., Brown N.E., Anderson E.D.;
RT   "Genomic organization of infectious salmon anaemia virus";
RL   J. Gen. Virol. 83(Pt 2):421-428(2002).
XX
RN   [2]
RP   1-2185
RA   Clouthier S.C., Rector T., Brown N.E., Anderson E.D.;
RT   ;
RL   Submitted (01-AUG-2001) to the EMBL/GenBank/DDBJ databases.
RL   Biochemistry, Microbiology and Molecular Biology, University of Maine, 5735
RL   Hitchner Hall, Orono, ME 04469, USA
XX
DR   SPTREMBL; Q8V3T6; Q8V3T6.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .2185
FT                   /country="Canada"
FT                   /db_xref="taxon:55987"
FT                   /note="segment: 2"
FT                   /virion
FT                   /organism="Infectious salmon anemia virus"
FT                   /isolate="CCBB"
FT   CDS             35. .2161
FT                   /codon_start=1
FT                   /db_xref="SPTREMBL:Q8V3T6"
FT                   /gene="PB1"
FT                   /product="putative PB1 protein"
FT                   /protein_id="AAL67962.1"
FT                   /translation="METLVGGLLTGEDSLISMSNDVSCLYVYDGPMRVFSQNALMPTLQ
FT                   SVKRSDQFSKGKTKRFIIDLFGMKRMWDIGNKQLEDENLDETVGVADLGLVKYLINNKY
FT                   DEAEKTSLRKSMEEAFEKSMNEEFVVLNKGKSANDIISDTNAMCKFCVKNWIVATGFRG
FT                   RTMSDLIEHHFRCMQGKQEVKGYIWKHKYNERLKRKQLSKEEVKFDREEYTSRSFRLLS
FT                   FLKNSERTKLEPRAVFTAGVPWRAFIFVLEQTMLVVNKLDPNSVIWMGSDAKINTTNSR
FT                   IKEIGMKNQGQTLVTLTGDNSKYNESMCPEVMMVFLRELGIKGPMLEVLDYALWQFSQK
FT                   SVKPVAPIKKRTGKSTVVIKADSVKECRDAFNEKELELIQGVEWMDDGFVRVRRGMLMG
FT                   MANNAFTTASTIASSFSFTPEAVYTLQSSDDFVTGSCGRDVQHARQRLEMALKVSKAAG
FT                   LNVSQKKSFYVEGTTFEFNSMFVRDGKVMANGGNFENMTVPGGLGPSTDLFVVGKQARN
FT                   SMLRGNLSFSQAMEMCKIGITNVEKVYYGNRKYQELKNEIREKCGEETMSIPESMGGDR
FT                   KPRPWELPQSFDGIALKEAVNRGHWKAAKYIKSCCSIEFDEEGDQSWDTSKTALVVIRK
FT                   NETDMRRRTVKTRNPKDKIFNDAMNKAKRMYETVVDRNPLLGLKGKGGRLTVKDLKARK
FT                   LIDEVEVVKKKKHV"
XX
SQ   Sequence 2185 BP; 796 A; 374 C; 560 G; 455 T; 0 other;

AF404346  Length: 2185  October 1, 2002 09:16  Type: N  Check: 4233  ..

       1  ccatggccgc gggattgaac gctctttaat aaccatggaa actctagtag
      51  gagggctgct gactggagaa gattctctga tcagtatgtc aaacgatgta
     101  tcttgtcttt atgtttacga tggaccaatg agagttttct ctcagaacgc
     151  attaatgcca actctgcaaa gtgtaaaaag aagtgaccaa ttttccaaag
     201  ggaaaacaaa gagatttatc attgacctgt tcggaatgaa gagaatgtgg
     251  gacatcggaa acaaacagtt ggaagacgag aacttagacg aaactgtagg
     301  cgtggctgac ttggggctgg tgaaatatct aatcaacaac aagtacgatg
     351  aagcagaaaa gacaagttta aggaagtcaa tggaagaagc attcgaaaaa
     401  tccatgaacg aagaatttgt ggttttaaac aaaggaaagt ctgcaaacga
     451  catcatttca gacacaaatg cgatgtgcaa attctgtgta aagaactgga
     501  tagtggcaac aggtttcagg ggaagaacga tgtcagattt aattgaacac
     551  catttcagat gcatgcaagg gaaacaggag gtgaaaggat acatttggaa
     601  acacaagtac aacgaaaggc ttaaaagaaa acagctaagc aaagaagaag
     651  tgaaattcga cagagaagaa tatacttcaa gaagcttcag actactctct
     701  ttcttgaaga acagcgagag gaccaaactc gagccgagag cagtgttcac
     751  agcaggagtt ccatggaggg cattcatctt cgtcctagaa cagacaatgc
     801  tggtggtaaa caaactggac ccgaattcag tgatatggat gggaagtgat
     851  gcaaagataa acaccacaaa ctccaggata aaggaaatag ggatgaaaaa
     901  tcaaggacaa acactagtga cactcacagg agataactcc aaatacaacg
     951  agagcatgtg cccagaggtg atgatggtgt tcctaagaga actaggaata
    1001  aaaggaccaa tgttggaagt actggactat gcgctgtggc aattttcaca
    1051  gaagagtgta aaacctgtcg cacctataaa gaagagaacc ggcaagtcta
    1101  ccgtggtgat aaaagcagat tccgttaagg agtgtagaga tgccttcaac
    1151  gaaaaggaac tggagctgat tcaaggagtt gaatggatgg acgacggatt
    1201  tgtgagagtg aggagaggaa tgttgatggg aatggcaaac aacgctttta
    1251  ccacagcttc tacaattgcc tcctctttta gtttcacacc agaagctgtg
    1301  tacacattac agagctcaga cgacttcgtt acaggtagct gtggaagaga
    1351  cgtgcaacac gcaagacaaa ggctagagat ggctcttaaa gtgagcaaag
    1401  ccgcaggtct gaacgtatca cagaagaagt cattctacgt tgaagggaca
    1451  actttcgagt tcaactctat gttcgtaaga gacggtaaag tgatggcaaa
    1501  cggaggaaac tttgagaaca tgacagttcc tggaggatta ggaccatcta
    1551  cagatctctt tgtcgtgggg aaacaagcaa gaaactccat gttgagaggc
    1601  aacctatcct tcagccaggc gatggagatg tgcaaaatag gaatcacaaa
    1651  tgttgagaaa gtttactatg gaaacagaaa ataccaggag ctgaaaaatg
    1701  agataagaga gaaatgtgga gaagaaacga tgtccatacc agagagcatg
    1751  ggaggagaca ggaaaccaag accgtgggaa ttacctcaga gctttgatgg
    1801  aattgcctta aaagaagctg tgaacagagg acattggaaa gctgccaagt
    1851  acatcaaatc ttgctgcagc atagagttcg atgaagaagg agaccaatct
    1901  tgggacactt cgaaaacagc acttgtggtc ataaggaaaa atgaaacgga
    1951  catgagaaga agaactgtta aaacgaggaa cccaaaagat aaaatcttca
    2001  atgatgcaat gaacaaggcc aaaaggatgt acgaaacagt cgtggacaga
    2051  aacccattac taggtctgaa ggggaaggga ggtagactga cagtaaaaga
    2101  cttgaaagca aggaagctta ttgatgaagt agaagttgtt aagaagaaaa
    2151  agcatgtttg aaatcactag tgcggccgcc tgcag