Sequence of DPV Papaya ringspot virus

Papaya ringspot virus isolate Nakhon Ratchasima polyprotein mRNA, partial cds.

ACC No: AF405531

Dated: 2001-08-30 | Length: 1596 | CRC: 1095727231

                !!NA_SEQUENCE 1.0
ID   AF405531   standard; mRNA; VRL; 1596 BP.
XX
AC   AF405531;
XX
SV   AF405531.1
XX
DT   30-AUG-2001 (Rel. 68, Created)
DT   30-AUG-2001 (Rel. 68, Last updated, Version 1)
XX
DE   Papaya ringspot virus isolate Nakhon Ratchasima polyprotein mRNA, partial
DE   cds.
XX
KW   .
XX
OS   Papaya ringspot virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1596
RA   Poonpipit R., Chatchawankanpanich O., Kositratana W.;
RT   "Comparison of the nuclear inclusion b (NIb) gene of four different Papaya
RT   ringspot virus isolates in Thailand";
RL   Unpublished.
XX
RN   [2]
RP   1-1596
RA   Poonpipit R., Chatchawankanpanich O., Kositratana W.;
RT   ;
RL   Submitted (02-AUG-2001) to the EMBL/GenBank/DDBJ databases.
RL   Plant Pathology, Kasetsart University, Kamphaengsaen, NP 73140, Thailand
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1596
FT                   /country="Thailand: Nakhon Ratchasima Province"
FT                   /db_xref="taxon:12205"
FT                   /mol_type="mRNA"
FT                   /organism="Papaya ringspot virus"
FT                   /isolate="Nakhon Ratchasima"
FT   mat_peptide     1. .1596
FT                   /product="nuclear inclusion b protein NIb"
FT   CDS             <1. .>1596
FT                   /codon_start=1
FT                   /db_xref="GOA:Q91HP1"
FT                   /db_xref="InterPro:IPR001205"
FT                   /db_xref="InterPro:IPR007094"
FT                   /db_xref="InterPro:IPR007095"
FT                   /db_xref="UniProtKB/TrEMBL:Q91HP1"
FT                   /product="polyprotein"
FT                   /protein_id="AAK95652.1"
FT                   /translation="LFDKLHGNLKGVSSSSSNLVTKHVVKGICPLFKNYLERDKEAKAF
FT                   FSPLMGHYMKSVLSKEAYVKDLLKYSSDIIAGEVDHDVFEDSVVQVVELLNDHECPELE
FT                   YITDSEVIIQALNMDAAVGALYTGKKRKYFEGSTVEHRQDLVRKSCERLYKGQMGVWNG
FT                   SLKAELRPAEKVLAKKTRSFTAAPLDTLLGAKVCVDDFNNWFYSKNMECPWTVGMTKFY
FT                   KGWDEFLRKFPDGWVYCDADGSQFDSSLTPYLLNAVLSIRLWAMEDWDIGAQMLKNLYG
FT                   EITYTPILTPDGTIVKKFKGNNSGQPSTVVDNTLMVLITMYYALRKAGYDTKAQEDMCV
FT                   FYINGDDLCIAIHPNHEHVLDSFSSSFAELGLKYDSTQRHRNKQDLWFMSHRGILIDDV
FT                   YIPKLEPERIVAILEWDKSKLPEHRLEAITAAIIESWGYGELTHQVRRFYQWVLEQAPF
FT                   NELAKQGRASYVSEVGSRRLYTSERGSMDELEVYIDKYFARERGDLPELLVYRESRSID
FT                   NYQFVGSDDTHVFRQ"
XX
SQ   Sequence 1596 BP; 463 A; 289 C; 401 G; 443 T; 0 other;

AF405531  Length: 1596  December 20, 2005 16:48  Type: N  Check: 3735  ..

       1  ctattcgata aattacatgg caacctcaag ggagtgagct cgtcatccag
      51  caatttagtc acaaagcacg ttgtgaaagg tatttgtcct ctctttaaaa
     101  attacctcga acgtgataaa gaagctaagg ctttctttag tccactgatg
     151  gggcactaca tgaagagcgt tctgagcaag gaagcatatg taaaggactt
     201  gctgaagtat tcaagtgaca taattgctgg tgaagttgat cacgacgtgt
     251  ttgaggacag tgttgtgcaa gttgttgagt tgctaaatga ccacgagtgt
     301  cctgaactcg agtacatcac agatagcgag gtcatcatac aagctcttaa
     351  tatggatgct gctgttggag ctttgtacac aggaaagaaa aggaaatact
     401  tcgaaggttc aacagtcgag cacagacaag acctagtgcg caagagttgt
     451  gagcgtctat acaaggggca gatgggtgtt tggaacggat cgctaaaggc
     501  tgagctgcga cctgcagaga aagtcttagc caaaaagacg agatccttta
     551  ccgcagcgcc tcttgatact ttgctgggag ccaaagtttg tgtagatgat
     601  ttcaataatt ggttctatag taaaaacatg gaatgtcctt ggactgttgg
     651  tatgacaaag ttttacaaag gctgggacga atttttgagg aaattccctg
     701  atggttgggt ttattgcgat gctgacggat ctcaatttga tagctctttg
     751  acaccgtacc tgcttaatgc tgttttgtca attcgactgt gggctatgga
     801  ggattgggat attggagctc aaatgcttaa gaatctatat ggagaaatta
     851  catacacacc cattttgaca cctgatggga caattgtcaa gaagtttaaa
     901  gggaataata gtggtcaacc ttcaacagtt gttgacaaca cactgatggt
     951  tttgatcaca atgtactacg cgctacgcaa ggctggttac gacacgaagg
    1001  cccaagagga tatgtgtgtg ttttatatta atggtgatga tctctgtatt
    1051  gccattcacc cgaatcacga acatgttctt gactcattct ctagttcatt
    1101  cgctgagctt ggactcaagt atgattccac tcaaaggcac cgaaataaac
    1151  aagatttgtg gtttatgtcg catcgaggta ttctgatcga tgacgtatat
    1201  attcctaaac ttgaacctga gagaattgtg gctatccttg agtgggacaa
    1251  atctaaactt ccagaacatc gattggaagc tataacagca gcaataatag
    1301  agtcatgggg atacggggag ttgacgcacc aggtccgtag gttttatcaa
    1351  tgggttcttg agcaggctcc atttaatgaa ttagcgaagc agggcagggc
    1401  ttcatatgtg tccgaagttg gatcgaggcg cctgtacaca agtgagcgtg
    1451  ggtcaatgga cgagctagaa gtttacatag ataaatattt tgcgcgagaa
    1501  aggggagatt tacctgagct actagtgtat cgcgaatcga gaagcatcga
    1551  caattatcag tttgttggca gtgatgacac acatgtgttt cgccag