Sequence of DPV Sea trout rhabdovirus
Trout rhabdovirus 903/87 nucleocapsid protein, phosphoprotein, matrix protein, and glycoprotein genes, complete cds; and polymerase protein gene, partial cds.
ACC No: AF434991
Dated: 2003-04-16 | Length: 6552 | CRC: 194113446
ID AF434991; SV 1; linear; mRNA; STD; VRL; 6552 BP.
XX
AC AF434991;
XX
DT 09-DEC-2001 (Rel. 70, Created)
DT 16-APR-2003 (Rel. 75, Last updated, Version 2)
XX
DE Trout rhabdovirus 903/87 nucleocapsid protein, phosphoprotein, matrix
DE protein, and glycoprotein genes, complete cds; and polymerase protein gene,
DE partial cds.
XX
KW .
XX
OS Trout rhabdovirus 903/87
OC Viruses; ssRNA negative-strand viruses; Mononegavirales; Rhabdoviridae;
OC unclassified Rhabdoviridae.
XX
RN [1]
RP 1-6552
RX DOI; 10.1016/S0168-1702(01)00323-9.
RX PUBMED; 11597744.
RA Johansson T., Nylund S., Olesen N.J., Bjorklund H.;
RT "Molecular characterisation of the nucleocapsid protein gene, glycoprotein
RT gene and gene junctions of rhabdovirus 903/87, a novel fish pathogenic
RT rhabdovirus";
RL Virus Res. 80(1-2):11-22(2001).
XX
RN [2]
RP 1-6552
RX DOI; 10.1023/A:1020153616947.
RX PUBMED; 12416676.
RA Johansson T., Ostman-Myllyoja L., Hellstrom A., Martelius S., Olesen N.J.,
RA Bjorklund H.;
RT "A novel fish rhabdovirus from sweden is closely related to the Finnish
RT rhabdovirus 903/87";
RL Virus Genes 25(2):127-138(2002).
XX
RN [3]
RP 1-6552
RA Johansson T., Nylund S., Olesen N.J., Bjorklund H.;
RT ;
RL Submitted (16-OCT-2001) to the INSDC.
RL Department of Biology/Institute of Parasitology, Abo Akademi University,
RL Artillerigatan 6 A 2, Turku 20520, Finland
XX
FH Key Location/Qualifiers
FH
FT source 1. .6552
FT /organism="Trout rhabdovirus 903/87"
FT /host="Salmo trutta m. lacustris"
FT /mol_type="mRNA"
FT /note="cRNA sequence"
FT /db_xref="taxon:170618"
FT CDS 89. .1369
FT /codon_start=1
FT /product="nucleocapsid protein"
FT /db_xref="GOA:Q77JP7"
FT /db_xref="InterPro:IPR000448"
FT /db_xref="InterPro:IPR023330"
FT /db_xref="InterPro:IPR023331"
FT /db_xref="UniProtKB/TrEMBL:Q77JP7"
FT /protein_id="AAL38515.1"
FT /translation="MDNSLVVVRATKAAFVPVRPKLEDEVNYPSEFFVDGKIPAFLHYY
FT ADKTQAELLGMIFGELSESRLPSELVTSYLYNVIKDWVEKLDAAWESYGTTIGDLNEVI
FT NAFSLMSYQVAAQPLPDYKVGAVPADIDPVAMVIFLLAPYRIVGIQNEEYQTRVMQTIQ
FT NQLDSLGAKKLSVRQLKNITTLTKSPNYLKVVAAVDMFYFHFKNNNEKAVVRVSTLGSR
FT HRDCAALATLNHIVQFTGLTLLEVLDWVFTDQVAMEIARMMHPNQEIDQADSYMPYLKD
FT FGLCRKSPYSSSANPGTHCWAQMTCALLGSKRSQNAIANTEENLVNLTRNAEIMACVLG
FT TGATLVKAIEINGVTGSEDDDDATEEDGTAEPTSMEALDWLDYVKANNCQLTPKMEARV
FT HMMSQRIQHARKDTVGAYLKARVSADH"
FT CDS 1569. .2561
FT /codon_start=1
FT /product="phosphoprotein"
FT /db_xref="UniProtKB/TrEMBL:Q8V319"
FT /protein_id="AAL38516.1"
FT /translation="MLSSNAQAKWSGVKQEIATLARGISGAGRSEENSLGIEPEKGDFK
FT PVTTSALSEFEVYTLTADEMLKEYGGDEEEEEEGDQYYAILPSDPGFQDESNPSDPSLE
FT SWTGQARDEEMEVDNDWNVHKGHLMGERTEREKTMIYREMTAMLGLFGGFLTVPKDGDH
FT YLVAMPSSNRMDRLGDEALRNKQIEQAQTEREQRKNHAADKSPQIPTFSVERPKPAPVA
FT VPRPPGLVKPTKPTEQKPKKVVEKCNYVSLEGTIGRKVWDSGVNGADVNGKVANFSPLK
FT MGWNIKDWDTRVSELGEVTTPQQLFLLMVQKSQKRNIYKRKYVSFSIVE"
FT CDS 2771. .3412
FT /codon_start=1
FT /product="matrix protein"
FT /db_xref="GOA:Q8V318"
FT /db_xref="InterPro:IPR009397"
FT /db_xref="UniProtKB/TrEMBL:Q8V318"
FT /protein_id="AAL38517.1"
FT /translation="MALSLFKKKDKNTKMSKGAMVVAVPTAPPAYPDAPGPFDAWNHTE
FT IEEISTVSYLIDTCMSVTTKRPIQSVMEAYKIAQGILDHYSGPHLTRPFFISLFLGGIH
FT GMQASARGTHSVRYEREFHGPLMFLYHLSNPLDWTPRPVSMHYTSSLDGHPVEVVFEAK
FT LTATRQTGPNVWTYFEGIKGLDRPNNEKVLNHFLVKTMQMGKNLVFNLDA"
FT CDS 3532. .5085
FT /codon_start=1
FT /product="glycoprotein"
FT /db_xref="GOA:Q8UY99"
FT /db_xref="InterPro:IPR001903"
FT /db_xref="UniProtKB/TrEMBL:Q8UY99"
FT /protein_id="AAL38518.1"
FT /translation="MDLLLKILLIIIIIKEARTRIAFVPLDLGTWRATSVDQLDCPMQG
FT DLVNQGTDAIEVRYQTAAWGLKNSVAGKLCVTAKWSITCDYRWYGSKYISTQIEYLPTT
FT PEMCKEAKRQLDRGELLSPHFSSENCGWNNVLTESETYTTIVSHPVKLDAYSLTLIDNI
FT FEGGKCHEEECPSLLHQGFWIADKNSLGLCKQLDSHIGRLFKTGLRNSMGTVVRQQWDI
FT NSIFQPEIGREKNFNGACTMEFCGHQGLRFADREWFKIPEQANQSLKKVFKDLPSCGTD
FT NLVHSHDINTDVKEITEHVHEVALHAICLQEVRRAKDSNTVSDWLLSMMTPFSEGAGPV
FT YRIHNGKLESTVGFYRKVLIEGGGTTEQLGIGFDKKPIKWDQFVVKTNDTRVQSMYNGN
FT TVVDGEIHWAKNVLGSHILDEIAALEFDIPLIQHPHLDGILINETHVISSHHPNGQGVN
FT FVESVTHWAGGIWESVGSSAIIIAVILVVGFVLVKFCMRFSMPVRRERREEGMMMLQRA
FT "
FT CDS 5184. .>6552
FT /codon_start=1
FT /product="polymerase protein"
FT /db_xref="GOA:Q8V317"
FT /db_xref="InterPro:IPR014023"
FT /db_xref="UniProtKB/TrEMBL:Q8V317"
FT /protein_id="AAL38519.1"
FT /translation="MSYDDTWEDPHWGDSTDDADIPEWLSDDIVRGNPLNQKDYSLNSP
FT LISDATIALMNYLNDGLTEKRFERSNANFALIQKTLKTQRWKHPEVHNHKWMGLWINKE
FT ETCKAFANLIDQTNADVLETEGILQAFLKGWIDQTTSAPTKTGWTARQRSYGAKFFLLH
FT RMILLMNAQSEEERDLLQKSLHLTRAIEKELIYRGESTTLGKYTLTSDFLLLQDQEIIL
FT DRTFVLMLKDTLVGRMQTLACFMNREDKKYEDGIIEKMEKLYWIGDKMLADIGDDAYAG
FT IKLLEPICNLRLAEMARTFRPLVPEFPHFRQHVETAVQEESQENFHLSDFYDFVNAEQN
FT VETLLAFFGSFRHWGHPYIDYFEGLKKLNKQVTLPKEIDETYAEALASDLAYMILRKHF
FT NTKRIWAVAKERVANDHPLKDHIKNATWPTPKQIDDFGDNWHKLPLTKIFEIPDLID"
XX
SQ Sequence 6552 BP; 2158 A; 1319 C; 1549 G; 1526 T; 0 other;
af434991 Length: 6552 16-APR-2003 Type: N Check: 7629 ..
1 aacagtaatc acaaagactt agattgaaca aatcaaagaa aacttgtaat
51 tactaaatca cattaagaag attacccaga tcagaaatat ggataactca
101 cttgttgtcg tccgagccac caaggctgct ttcgtacccg ttcgacccaa
151 attggaagat gaggtcaact accctagtga gttctttgtg gacggaaaaa
201 tccctgcatt cttgcactac tatgctgaca aaactcaggc tgaacttctg
251 gggatgatct ttggagaatt gtctgagtct agactgccta gcgaattggt
301 tacatcatac ctgtacaacg tgatcaaaga ctgggtagag aagctggacg
351 cagcatggga atcctacggg acaaccatcg gggatctcaa tgaggtcatt
401 aacgctttct ccctgatgtc ctatcaagtt gcagctcagc cacttcctga
451 ttacaaggtg ggagcagttc ctgctgacat agaccctgtc gctatggtga
501 tctttctctt ggctccttac agaattgtgg ggattcaaaa cgaagagtat
551 cagacacgag tcatgcagac aatccagaat cagctggaca gcctgggagc
601 aaagaagttg tctgtgagac agctgaaaaa catcactact ctgacaaaga
651 gtccaaatta cctgaaggtg gtcgctgcag tggatatgtt ctacttccac
701 ttcaagaaca acaatgaaaa agctgtagtc cgagtgtcca ctctggggtc
751 tcgacacaga gattgtgctg cactggcaac actgaatcac attgtgcagt
801 tcactggatt gaccttgctc gaagttctgg attgggtctt tacagatcag
851 gtagccatgg aaattgcgag gatgatgcac ccaaaccagg aaattgacca
901 ggctgattcc tacatgccat acctcaaaga cttcggcctg tgcaggaaat
951 ctccttactc atcatctgcg aatccaggaa cccactgctg ggcacagatg
1001 acttgtgctc tgctgggctc taagcggtca cagaatgcga tagctaacac
1051 agaggaaaat cttgtcaact tgaccaggaa tgctgagatc atggcctgtg
1101 tcctgggaac gggagcgaca cttgtcaagg ctattgagat caatggtgtg
1151 acaggatctg aagatgatga cgatgccact gaggaagacg ggactgcaga
1201 gccaacatcc atggaagcac tggactggct agactatgtc aaggccaaca
1251 attgccagct gactccgaag atggaagcaa gagtccacat gatgagtcag
1301 aggatccagc atgcccgtaa agacacagtg ggtgcttacc tgaaagccag
1351 agtgtctgct gatcattaaa acagctgtca gcaatgaggc cttaaaggag
1401 aaaaaatgga taaaattaca gaaataacat caagagagtt tgtgataatg
1451 aagctatatc gtcagaggaa gtctgattta ttatgaaaaa aactttaaca
1501 gaattcaacc gaattttgga gattacactt aactgaactt aacaaataga
1551 tataaagaaa ggataacaat gctgtcatca aatgcacaag caaagtggag
1601 cggggtcaaa caggaaatag caactttggc cagaggaatc agtggagcag
1651 gcagatctga agagaacagt ttgggaattg aaccagagaa gggtgacttc
1701 aagccagtga caacgtctgc cctcagtgag ttcgaggtgt acactctaac
1751 tgctgatgaa atgctcaaag agtacggtgg agacgaagag gaagaagagg
1801 aaggggatca atattatgca attttaccgt ctgatcccgg atttcaggat
1851 gagtcaaacc cttctgatcc gtctttggag agctggacgg gacaagccag
1901 agacgaagag atggaggtgg acaatgattg gaacgtccac aaaggacatc
1951 tgatgggaga acgcacagaa agagaaaaga ccatgatcta cagagaaatg
2001 actgctatgc tagggctgtt cggaggcttt ttgactgttc caaaagatgg
2051 tgatcactac ttggttgcga tgccatcatc caatagaatg gacagattgg
2101 gtgatgaggc tctcaggaat aagcagatcg aacaggcaca aaccgaaaga
2151 gaacagagaa agaatcatgc agctgacaag tcacctcaaa ttcccacttt
2201 ctccgtagag cgacctaaac cagctcctgt tgctgtgcca agacctcctg
2251 gactagtgaa accaacaaaa ccaactgagc aaaaaccaaa aaaggtggtg
2301 gagaaatgca actatgtgtc tttggagggg accattggaa gaaaggtatg
2351 ggacagcgga gtgaatggag ccgacgtcaa tggaaaagtg gccaactttt
2401 cacctctcaa gatggggtgg aacataaagg actgggacac tagagtgtct
2451 gaattgggag aagtgaccac accacaacag ttgttcctcc tgatggtgca
2501 aaagtctcag aagagaaaca tatacaaaag gaagtatgtc agcttcagca
2551 ttgtggaata acaagacaag tgatgcagat aatcacacgg taagtccata
2601 aaattgtcaa agaagatgct attgatcaaa aatgtgagga tgaatgatgt
2651 gtgtacgaaa aaaaccagtt aacagagatc aacagagact tgattgacga
2701 acgcacaaac aaagaagcaa caggattact ccattaacta aagattaaac
2751 agtaattact caaacaaaca atggcactca gcttgttcaa gaaaaaggat
2801 aagaacacta aaatgtccaa aggtgctatg gttgtagctg tgccgacagc
2851 tcctccagct tatcctgatg cgccagggcc gttcgatgct tggaatcaca
2901 ccgagataga agagattagc acggtgtcat acctgattga cacatgtatg
2951 tcagtgacaa ctaagcgccc gatccagagt gttatggaag cgtacaaaat
3001 cgcgcaggga atcttagacc actacagtgg gcctcatcta actcgccctt
3051 tcttcatttc actgttcctg ggaggaatac atggaatgca ggctagcgca
3101 agaggcacac acagtgtcag gtacgaaaga gaattccatg gacctctaat
3151 gttcttgtac catctgagca atccattgga ctggacccca agaccggtct
3201 caatgcacta cacatctagt ctggatggac atcccgttga ggtggtattt
3251 gaggcaaagc tgacggcaac acgccagaca gggccaaatg tgtggactta
3301 cttcgaagga atcaaaggac tggatcgccc aaacaacgag aaagttctga
3351 atcacttctt ggttaagacc atgcagatgg ggaagaacct ggtcttcaac
3401 ttggatgctt aaagagctag taaatgctga ttaagtggtt attttcttaa
3451 ttgtgaggag aggatatgaa aaaaactgca acaggattca gaattaaatc
3501 attcagcgac gtcgagattg aagatttaga catggatctg ttattgaaaa
3551 tactgctgat tattataatc atcaaagaag cacgaactag gatagctttt
3601 gttccattag atttgggaac atggagagcc acaagtgtgg accaactgga
3651 ctgtccgatg caaggagatt tagtcaacca aggtactgat gcaattgagg
3701 tccggtatca aactgctgca tggggtttga aaaacagtgt agctgggaaa
3751 ctatgtgtca ctgcaaagtg gtccatcaca tgtgactacc gttggtatgg
3801 gtcgaaatac atctcgactc aaattgaata tctccccacc acacctgaaa
3851 tgtgcaaaga agctaagaga caattagatc gaggcgagct gcttagtcca
3901 catttctcct cagaaaattg cggctggaat aatgtcctga cagaatcaga
3951 aacctacaca accattgtgt ctcaccctgt gaaactggat gcttactccc
4001 tgactttgat tgacaacata tttgaaggag ggaaatgcca tgaagaagaa
4051 tgtccgtctc tccttcacca aggtttttgg atcgcagata aaaattccct
4101 aggtctttgt aaacaacttg actcacacat tggaagactt ttcaaaacag
4151 gcctgaggaa ctccatgggg acagtagtca gacaacaatg ggacattaat
4201 tctatatttc agccagagat agggcgtgaa aagaatttca atggagcctg
4251 tacaatggag ttttgtggcc atcaaggatt aagatttgca gatcgggaat
4301 ggttcaagat ccctgaacag gcaaaccaaa gccttaaaaa ggtcttcaaa
4351 gatttaccat cttgcggcac agacaatttg gttcatagtc atgacatcaa
4401 cacagatgtc aaagagataa cagagcatgt ccacgaagtt gcactccatg
4451 ctatctgcct tcaagaagtc agaagggcca aagacagcaa cacagtgtca
4501 gattggttat tgagtatgat gacaccattc agtgaaggtg cgggaccagt
4551 gtacagaatc cataatggga aattggaatc aacagtaggg ttttacagga
4601 aggtgctgat agagggtggg ggaactacgg agcagctggg gattggattt
4651 gacaaaaaac cgatcaaatg ggatcaattt gttgtcaaga caaatgacac
4701 cagagttcaa tctatgtaca atgggaacac cgtagtcgat ggagaaattc
4751 attgggcaaa aaatgtccta ggttctcata ttttggacga aattgcggcc
4801 ctagaattcg acattccact gattcaacac cctcacttag atggaatcct
4851 aatcaatgaa acacatgtta tcagctccca tcatccaaac ggacaagggg
4901 tgaactttgt agagagcgtc acacattggg cgggagggat atgggaatca
4951 gttggatcca gtgctattat cattgctgtc atattagtgg taggattcgt
5001 attggtcaag ttctgcatga ggttctctat gcctgtccga cgagaaagga
5051 gagaagaagg catgatgatg ttacaaagag cctgaagata aaaataaaaa
5101 tacctgcatc cgataagaaa ccaatcgaaa ttgcaacttt aataatggat
5151 agctgcttat gaaaaaaaca gctaacaggc atcatgtctt acgacgatac
5201 ctgggaagat ccccattggg gagattccac ggatgatgcc gacatacctg
5251 aatggttgtc tgatgatata gtgaggggaa atccattgaa tcaaaaagat
5301 tacagtctta actcccccct tatctcagac gctactatag cattaatgaa
5351 ctacttaaat gatggattga ctgaaaaacg ctttgagcga tccaatgcca
5401 attttgcatt gatacaaaag actctaaaaa cccaaagatg gaaacatcct
5451 gaagtacaca atcataaatg gatgggattg tggatcaaca aggaagaaac
5501 atgtaaagct tttgcgaacc tgattgatca gaccaacgca gatgtcctag
5551 agactgaggg gatactgcaa gcatttctga aaggatggat cgaccaaaca
5601 accagtgcgc caactaagac agggtggaca gccagacaaa gaagttatgg
5651 agccaaattc ttcttgcttc atcgaatgat cctattgatg aatgcacaat
5701 cagaagaaga aagagatctc ttacaaaaat cattgcattt gacaagggca
5751 atagaaaagg agctgattta cagaggagaa tcaacaacct taggcaagta
5801 cacattgacc agcgatttct tgctgttgca agatcaagag atcattctag
5851 acagaacatt cgtcctcatg ctcaaagaca ccctggtggg gcgaatgcaa
5901 acacttgctt gcttcatgaa tcgagaggac aaaaaatacg aagatggaat
5951 catcgagaaa atggaaaagc tctactggat tggagacaag atgttagcag
6001 acattgggga tgatgcatat gctgggataa aacttttgga acctatttgc
6051 aatctcagac tagcagagat ggccagaaca ttccgtccgt tggtgccaga
6101 atttccacac ttccgacagc atgttgaaac cgctgtacaa gaagagtccc
6151 aagaaaattt tcatcttagt gacttttatg actttgtcaa cgctgagcaa
6201 aatgtagaga cattactggc attctttggc tctttccgac attggggaca
6251 cccttacatc gattactttg aaggcttgaa gaagctaaac aaacaagtga
6301 cgttaccaaa agagatagat gaaacctatg cggaagcatt agctagtgat
6351 ttagcttaca tgatcttgag gaagcacttc aacaccaaga gaatatgggc
6401 ggtagcaaaa gaaagagtag caaatgatca cccccttaaa gatcacatca
6451 agaatgcgac ttggccgact ccaaaacaaa tcgatgactt tggagacaac
6501 tggcacaaat tgcctctaac aaagattttt gaaatcccag acttgataga
6551 tc