Sequence of DPV Bean leafroll virus
Bean leafroll virus, complete genome.
ACC No: AF441393
Dated: 2006-01-11 | Length: 5964 | CRC: 248496492
ID AF441393 standard; genomic RNA; VRL; 5964 BP.
XX
AC AF441393;
XX
SV AF441393.1
XX
DT 22-JAN-2002 (Rel. 70, Created)
DT 11-JAN-2006 (Rel. 86, Last updated, Version 3)
XX
DE Bean leafroll virus, complete genome.
XX
KW .
XX
OS Bean leafroll virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Luteoviridae;
OC Luteovirus.
XX
RN [1]
RP 1-5964
RX PUBMED; 12075101.
RA Domier L.L., McCoppin N.K., Larsen R.C., D'Arcy C.J.;
RT "Nucleotide sequence shows that Bean leafroll virus has a Luteovirus-like
RT genome organization";
RL J. Gen. Virol. 83(Pt 7):1791-1798(2002).
XX
RN [2]
RP 1-5964
RA Domier L.L., McCoppin N.K., Larsen R.C.;
RT ;
RL Submitted (29-OCT-2001) to the EMBL/GenBank/DDBJ databases.
RL Dept. Crop Sciences, University of Illinois, USDA-ARS, 1102 S. Goodwin
RL Ave., Urbana, IL 61801, USA
XX
FH Key Location/Qualifiers
FH
FT source 1. .5964
FT /db_xref="taxon:12041"
FT /mol_type="genomic RNA"
FT /organism="Bean leafroll virus"
FT CDS join(179. .1278,1278. .2883)
FT /codon_start=1
FT /db_xref="GOA:Q8V2F7"
FT /db_xref="InterPro:IPR002166"
FT /db_xref="InterPro:IPR007094"
FT /db_xref="InterPro:IPR007095"
FT /db_xref="UniProtKB/TrEMBL:Q8V2F7"
FT /note="ORFs 1+2; low-abundance product derived from -1
FT ribosomal frameshift during translation of ORF1"
FT /product="RNA-dependent RNA polymerase P1-P2 fusion"
FT /ribosomal_slippage
FT /protein_id="AAL66234.1"
FT /translation="MFNFDSLITASSRVVKDFIHFCYNRARSVYCALKRWLWELQGKFD
FT AHNAFVDLCYDAMYGIEKFEEELAEEYTLAESEVALAECHYRYLVSNGAPLTHWPVPCP
FT PPGAHRSIDDYEDSVDEAGAFEEVIPSVPKPEPIPSKDGKKDHSKSNPFRVKAFINLVK
FT AKEVLQATEQKIKVVYEEEIGESPFGRWFNTLPSRMHYIKRALKKRAVNAKRAKHVTSM
FT MKEVNVIPDFVACCEVVQVPTGEMIPPKKNEHGEDVGEPTPKTKMVRRVLPECAAEARS
FT YIRQHIRNNNMRLIDGTDVAHATINRYALKFCEELDLDLPSTTMLVDYAMTMVPLPLKN
FT DIERAKIVHSPNARRIRDELDCLTSSVFLEGLCSDSGFESPFSILGLPEIVVRSGAIPR
FT KSRSKINFLSQFTLGLDYQCPNPSLHNALVAVERRVFTVGKGNEVVRPYSPLQGQFEKM
FT NYFRDAIVKDVGCPKTYTPEQLAATFKSGKRSLYNTAVLSLKRKAVEKQDSFVTAFLKM
FT EKHMMCKKIAPRLICPRNKRYNVELGRRLKFSEKKFMHAIDNVFKSPTVLSGYDSFKVG
FT RIIADKWGRFKRPVAIGVDASRFDQHVSKQALEWEHSIYNGCFRDKQLEELLKWQTENK
FT VMLFVEDKILKFKVSGHRMSGDINTSMGNKLIMCGMMHNYFRELGVEAELCNNGDDCVI
FT ICERKNEKRFSDMHRWFKEYGFDMQIEKPVYKLTELEFCQSKPVKINGFYRMVRKPQSI
FT SKDAHSLISMASAEDVKTFMSATAQCGLILNSGVPVLEAFHNCLYKASGYKHVSQELID
FT KVVSFGTQDKLGLRKERVEEPVTMENRLSYWESFGVDPQTQVLVERYFNNLQVSIEPRG
FT VKRLTPLLDAKLLNIDIPARCSVSLPTILQ"
FT CDS 179. .1285
FT /codon_start=1
FT /db_xref="GOA:Q8V2F8"
FT /db_xref="UniProtKB/TrEMBL:Q8V2F8"
FT /note="ORF1"
FT /product="RNA-dependent RNA polymerase P1"
FT /protein_id="AAL66233.1"
FT /translation="MFNFDSLITASSRVVKDFIHFCYNRARSVYCALKRWLWELQGKFD
FT AHNAFVDLCYDAMYGIEKFEEELAEEYTLAESEVALAECHYRYLVSNGAPLTHWPVPCP
FT PPGAHRSIDDYEDSVDEAGAFEEVIPSVPKPEPIPSKDGKKDHSKSNPFRVKAFINLVK
FT AKEVLQATEQKIKVVYEEEIGESPFGRWFNTLPSRMHYIKRALKKRAVNAKRAKHVTSM
FT MKEVNVIPDFVACCEVVQVPTGEMIPPKKNEHGEDVGEPTPKTKMVRRVLPECAAEARS
FT YIRQHIRNNNMRLIDGTDVAHATINRYALKFCEELDLDLPSTTMLVDYAMTMVPLPLKN
FT DIERAKIVHSPNARRIRDELDCLTSSVF"
FT CDS 3093. .5261
FT /codon_start=1
FT /db_xref="GOA:Q8V2F5"
FT /db_xref="InterPro:IPR000893"
FT /db_xref="InterPro:IPR001517"
FT /db_xref="InterPro:IPR002929"
FT /db_xref="UniProtKB/TrEMBL:Q8V2F5"
FT /note="ORFs3+5; translated from subgenomic RNA1 as a fusion
FT protein via read-through of the coat protein P3 stop codon;
FT may play a role in systemic movement and/or aphid
FT transmission"
FT /transl_except=(pos:3681. .3683,aa:OTHER)
FT /product="coat P3 and systemic movement/aphid transmission
FT P5 fusion protein"
FT /protein_id="AAL66237.1"
FT /translation="MVARGKRVVVRQLQTRARRRLPVVLATAPVRPQRKRRQRGRNNKS
FT RGGNGFARRSSQVHEFVFSKDNLNGNSKGSITFGPSLSECKPLADGILKAYHEYNITNV
FT ELAYITEASSTSSGSIAYELDPHLKNTTIQSKINKFSITKSEKKKFSRKAINGQAWHDT
FT SEDQFRILYEGNGDAKIAGSFRVTIKVLTQNPKXVDGEPDPPGPGPDPPPPTPAPTPQP
FT QPTPKHERFIVYTGVPESRISAQSTDDSISVYSLQNQRLRYIEDENANWTNIEARWYSN
FT NNVKATPMFIFPVPQGKWSVEISTEGYQPTSSTTDPNNGKCDGLIAYSDDDKTDVWNVG
FT VQKNITLSNNKADNTWKYGHPDLEINNCKFNNRQVLERDAYISFHVETTGPNASFFLVA
FT PPVQKTARYNYAVSYGAWTDRMLEFGSVTVALDEHLEGGNSSRYIRRSPRPGHLESTRT
FT YDLHLLPHMDDLIAANTTAVVDGYGSSISIDRQVLVAVDNHIVDSGDETDDLPGYSSSS
FT SEAPKLPAVNQTKLPPKGFLSRLRESEIEEIADKPTEITTPEVRQLADATHQPFAAGMY
FT NDAFERLSINEKKRNFDSVKDDIAEIERTLPKEEYRVPKLPRIKPASEVDNDHYGESQQ
FT TLAEIERRNVWASKDDAVAVESPPPGYPLGPIEARELMPVEWSRPDYEPPKPKKSLFGR
FT LKSQAKVEANPSSPRNDIRRSSFSSFRR"
FT CDS 3093. .3683
FT /codon_start=1
FT /db_xref="GOA:Q8V2F6"
FT /db_xref="InterPro:IPR001517"
FT /db_xref="UniProtKB/TrEMBL:Q8V2F6"
FT /note="ORF3; translated from subgenomic RNA1; occasional
FT read-through of stop codon produces P3-P5 fusion protein"
FT /product="coat protein P3"
FT /protein_id="AAL66235.1"
FT /translation="MVARGKRVVVRQLQTRARRRLPVVLATAPVRPQRKRRQRGRNNKS
FT RGGNGFARRSSQVHEFVFSKDNLNGNSKGSITFGPSLSECKPLADGILKAYHEYNITNV
FT ELAYITEASSTSSGSIAYELDPHLKNTTIQSKINKFSITKSEKKKFSRKAINGQAWHDT
FT SEDQFRILYEGNGDAKIAGSFRVTIKVLTQNPK"
FT CDS 3238. .3666
FT /codon_start=1
FT /db_xref="InterPro:IPR001964"
FT /db_xref="UniProtKB/TrEMBL:Q8V2F4"
FT /note="ORF4"
FT /product="movement protein P4"
FT /protein_id="AAL66236.1"
FT /translation="MDLPEDQARFTNSYSLRTTSMETPREVSRSGRLYQSASRSQMAYS
FT RPTMSIISRTSSWRTSPRPLPPPQVPSLMNSILTSRTQQSSPKLTNSASPSLRRKSSLG
FT RLSMDRHGTTLQRTNSGFSMKETETPRLLDRSESLSRY"
XX
SQ Sequence 5964 BP; 1740 A; 1317 C; 1391 G; 1514 T; 2 other;
af441393 Length: 5964 11-JAN-2006 Type: N Check: 9476 ..
1 ggtaaagttg acacctttac aagagcaggt tttacaagtt gactacttgt
51 gtattggaaa cctcactgcc caacgcctcc gtatcgcgat tgcagtttac
101 attagtgtct tttaaatgtt taacctcact gcccaacgcc tccgtaycgc
151 gattgcagtt tgtattagtr tcttttaaat gtttaatttt gatagcttga
201 tcaccgcgtc ttcgcgggtg gtcaaagatt ttattcattt ttgttacaat
251 agggcaaggt cagtatactg tgcccttaaa cgctggctgt gggagctgca
301 gggaaaattt gatgcacata atgcgtttgt tgatctctgc tacgatgcca
351 tgtatggcat tgaaaaattt gaggaggagc tagccgagga atataccctg
401 gctgaatctg aagtcgccct agctgagtgc cattataggt acttggttag
451 caatggtgct cccctcaccc actggccggt accttgcccg cctcctggtg
501 ctcatcgttc catagatgac tatgaagatt ctgtggacga ggctggggca
551 tttgaggaag tgattccctc tgtgcctaaa cctgaaccta tcccttctaa
601 ggatgggaag aaggaccact ctaaaagtaa tccttttagg gttaaagctt
651 tcattaacct cgtgaaagca aaagaggttc tacaggccac tgaacaaaaa
701 attaaggtgg tctatgagga agagattgga gagagcccct ttggaaggtg
751 gtttaatact ctcccgtccc gcatgcatta catcaagcgt gcgctgaaga
801 aacgtgctgt caacgcaaag agagcaaagc acgtaacaag catgatgaag
851 gaagtcaacg tgattcctga cttcgtcgca tgctgtgaag tcgtccaggt
901 acctactggc gaaatgatac ccccaaagaa aaatgaacat ggggaagatg
951 ttggcgaacc cactcccaaa acaaaaatgg tgagaagggt actccccgaa
1001 tgtgcagctg aagcgcgttc gtacataagg cagcatatcc gtaataacaa
1051 catgcgcctt attgacggca ctgacgtggc ccacgctacc ataaataggt
1101 atgcgttaaa gttctgcgag gaacttgatc tggatctacc aagcacaact
1151 atgctggttg attatgccat gactatggtc ccccttcccc tcaaaaatga
1201 cattgagagg gcgaagatag ttcactcacc taatgctaga cgcattagag
1251 atgagttgga ctgtctcacc tcatcggttt tttagagggg ctctgctccg
1301 actctggttt tgaatccccc ttttctattt tgggattacc agagatcgtg
1351 gtgcgtagcg gggctatccc taggaagagt cgtagtaaga ttaattttct
1401 tagtcagttt accctaggcc tagattacca gtgtcctaat cccagcttgc
1451 acaatgcact ggtcgcagtt gaacgtcgag tgttcactgt aggaaaagga
1501 aatgaggtgg tgcgtcctta ctctcccctt cagggtcagt ttgaaaagat
1551 gaactacttt agagatgcta ttgttaagga tgttggatgt ccaaagacat
1601 acacaccaga acaacttgct gccactttca aatctgggaa gaggtcgctg
1651 tacaacacag cggttctctc cttgaagagg aaagctgttg agaagcaaga
1701 ttcgtttgtt acagcatttt tgaagatgga aaaacatatg atgtgtaaga
1751 agatcgcacc cagacttatc tgcccccgaa ataaacggta caatgttgaa
1801 ttagggcggc ggcttaaatt ctctgagaag aaatttatgc acgcaataga
1851 taatgtcttt aaatccccca ccgttctcag cggttatgat agtttcaaag
1901 tgggaaggat tatagccgat aaatggggca ggtttaagcg ccccgtagcc
1951 attggtgttg atgccagtcg ctttgaccaa catgtcagca agcaggccct
2001 agaatgggaa cactctattt ataatgggtg ttttcgagac aaacaactag
2051 aggaactctt gaaatggcaa acagaaaaca aagttatgct gtttgttgaa
2101 gataagatat tgaagttcaa agtgtctgga cacagaatgt caggagacat
2151 caacacatca atgggcaaca aattgatcat gtgcgggatg atgcacaatt
2201 acttcagaga gcttggtgta gaagctgagc tatgcaacaa tggagatgat
2251 tgtgtcatta tctgtgagcg aaaaaacgag aaaagattct cagatatgca
2301 cagatggttt aaggaatatg gcttcgatat gcagatagag aaacccgttt
2351 acaaactaac ggagttagaa ttttgccaat ccaaaccggt caagatcaac
2401 ggcttttaca gaatggtgcg taaaccacag tctatttcaa aggacgcaca
2451 ttctctcatt tccatggcat cagctgaaga tgtcaagacc ttcatgagtg
2501 ctactgctca atgcgggtta attttaaata gtggagtacc cgtgttggaa
2551 gcatttcata attgcctata caaagcttcc gggtacaaac atgtttcgca
2601 ggaactaatc gacaaggtag tctcctttgg cacgcaagac aaactcgggc
2651 tcaggaaaga gcgagttgaa gagccagtaa ctatggaaaa taggttgagt
2701 tactgggagt cttttggggt tgacccgcaa actcaggtcc ttgttgaacg
2751 atacttcaac aatttgcagg ttagcatcga gccccgtggc gtaaagagat
2801 tgacgccttt acttgacgcg aaacttttaa acatagacat ccctgctaga
2851 tgctctgtgt ccttacccac tattctgcag tagattatat tatattatta
2901 gtagctatta ttatattagt agttctcaac ctcttgctta gctattgcct
2951 gagaagagaa gaataggttc cttcgattac aagttcttag ctgcgtttgt
3001 gttgggcttt gtatccaaca ttccagttac agcattggga atctatattg
3051 tttaccaacg gattctaaaa gagatcagag aaataatcaa cgatggtcgc
3101 tagaggaaaa cgagttgtcg ttcgacaatt acagacccgc gcaaggagac
3151 gtttaccagt cgttctggct acggcccctg tgcgaccaca acgaaaacga
3201 cgacaacgag gacgaaataa caaatctcga ggaggaaatg gatttgcccg
3251 aagatcaagc caggttcacg aattcgtatt ctctaaggac aacctcaatg
3301 gaaactccaa gggaagtatc acgttcgggc cgtctctatc agagtgcaag
3351 ccgctcgcag atggcatact caaggcctac catgagtata atatcacgaa
3401 cgtcgagctg gcgtacatca ccgaggcctc ttccacctcc tcaggttcca
3451 tcgcttatga actcgatcct cacctcaaga acacaacaat ccagtccaaa
3501 attaacaaat tcagcatcac caagtctgag aagaaaaagt tctctcggaa
3551 ggctatcaat ggacaggcat ggcacgacac ttcagaggac caattcagga
3601 ttctctatga aggaaacgga gacgccaaga ttgctggatc gttcagagtc
3651 actatcaagg tattaactca gaatccaaaa taggtagacg gagaaccgga
3701 tcctccgggc cctggcccag atccaccacc accaacacct gcaccaacac
3751 cacaaccaca gccaacgccg aagcacgaaa gattcatcgt ttatactggc
3801 gtacccgagt cccgcattag tgcgcaatca acggatgatt caatctccgt
3851 ttattctttg caaaatcaaa gattgcgata catcgaggac gaaaatgcga
3901 actggacgaa tattgaagcc aggtggtact ctaacaacaa tgttaaagcc
3951 accccgatgt ttatttttcc agttcctcaa ggcaagtggt cggttgagat
4001 atctactgaa gggtaccaac caacgtcaag cacaacagac cctaataatg
4051 ggaaatgcga tggattgatc gcttacagtg atgatgacaa gacggatgtt
4101 tggaatgtag gagtgcaaaa gaacataacc cttagcaaca acaaggccga
4151 caacacgtgg aagtatggcc acccagactt ggagattaac aactgcaagt
4201 tcaacaatag gcaagtcctg gaacgcgatg cgtacatttc gttccatgtt
4251 gaaacaactg ggcccaatgc ttccttcttc ttagttgcgc ctccagttca
4301 aaagactgct cggtataatt atgccgtatc ttatggagct tggactgata
4351 ggatgctaga gtttggttct gttactgttg cacttgatga acatttagaa
4401 ggtggtaaca gttctcgata tattaggagg tcaccaaggc caggacacct
4451 tgagtcgaca agaacatatg atttgcactt attgcctcat atggacgatc
4501 tcatagccgc caacactaca gctgttgtag atggctatgg gagtagtatt
4551 agtatagata gacaagtctt agttgccgtt gacaatcata tagtagattc
4601 cggcgacgag acggatgatc ttccaggtta ttcaagctca tcttctgaag
4651 cacctaaatt acctgccgtt aatcaaacga agttgccacc aaaagggttt
4701 ctgtccaggt tgcgagagtc cgagatcgaa gagatagcgg acaaaccaac
4751 cgagataaca acacctgagg ttagacaact agctgatgcc acacatcagc
4801 cttttgccgc agggatgtac aatgacgctt ttgagcgact gtccataaat
4851 gaaaagaaac gcaattttga ttccgtcaag gatgatattg ctgaaataga
4901 gaggacattg ccaaaagaag agtacagggt gccaaaactg ccacgcatca
4951 agcccgcttc cgaagtggat aacgatcact atggtgaaag tcaacaaact
5001 ttggcagaga tcgaaagacg taacgtctgg gccagtaaag atgacgctgt
5051 tgcggttgaa tctccacccc cgggttatcc tcttgggcca attgaggcta
5101 gggagttaat gccggttgag tggagtagac cagattatga gcccccgaaa
5151 cctaagaagt cattgtttgg cagactcaag tcacaagcca aggtagaagc
5201 taatccttct tctcctcgca atgacataag aagatcatct tttagtagct
5251 ttcgtagata gacatctcta gactcactga gagccaacgc agcgccacta
5301 gtgcatcgaa tcctgggaaa caggcacgga gaacaaaatc cggtaagctc
5351 gggaagccgt caacttccgc cgtattgatg aaaacaactt ggccgacgct
5401 gttaataacc ttagcatctt gagttctact aaaaattaga tagttttccg
5451 cctcttccaa aagttgccac cttttggaat gtgagataga tggagagagg
5501 ttgccttgaa taagcaactg ttgatgtctg ctggtattga gtccaatgat
5551 caaaactcac gttgcttctg acgtatacac tgcccctgat tcaacagggt
5601 aaacaaattt gcgccacctc gatgagatga gagtgaagcg cggagtaaag
5651 agttgcatct acttttgtag gttgcaactc tggggagttt tgtagcaggc
5701 caaaagccaa actagttctt cctcgtacgg aaacaaaaac aggtatgatt
5751 gttcggacat cattggtact agttgccaat gtacagatgg tctaacagat
5801 accccccctc tgctcgggtt taaatgtcag cgctggctct tcagcgacaa
5851 caagggggcg ttcctgcttg cctcccaatg gatcctgcag gaacaggtct
5901 tcgaatcttt atgagatttg cggacctctt tgttgttaag gtggcgaaag
5951 cgcccacctg cccc