Sequence of DPV Indian peanut clump virus
Indian peanut clump virus D segment RNA-2 coat protein, P34, P49, P14, and P17 genes, complete cds.
ACC No: AF447396
Dated: 2003-05-29 | Length: 4310 | CRC: 507723506
!!NA_SEQUENCE 1.0
ID AF447396 standard; genomic RNA; VRL; 4310 BP.
XX
AC AF447396;
XX
SV AF447396.1
XX
DT 02-JAN-2003 (Rel. 74, Created)
DT 29-MAY-2003 (Rel. 75, Last updated, Version 3)
XX
DE Indian peanut clump virus D segment RNA-2 coat protein, P34, P49, P14, and
DE P17 genes, complete cds.
XX
KW .
XX
OS Indian peanut clump virus D
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Pecluvirus;
OC Indian peanut clump virus.
XX
RN [1]
RP 1-4310
RX MEDLINE; 22422427.
RX PUBMED; 12536297.
RA Naidu R.A., Sawyer S., Deom C.M.;
RT "Molecular diversity of RNA-2 genome segments in pecluviruses causing
RT peanut clump disease in West Africa and India";
RL Arch. Virol. 148(1):83-98(2003).
XX
RN [2]
RP 1-4310
RA Naidu R.A.;
RT ;
RL Submitted (14-NOV-2001) to the EMBL/GenBank/DDBJ databases.
RL Plant Pathology, University of Georgia, Miller Plant Sciences Building,
RL Athens, GA 30602, USA
XX
DR GOA; Q8B100.
DR GOA; Q9IZ87.
DR SPTREMBL; Q8B0Z8; Q8B0Z8.
DR SPTREMBL; Q8B0Z9; Q8B0Z9.
DR SPTREMBL; Q8B100; Q8B100.
DR SPTREMBL; Q8B101; Q8B101.
DR SPTREMBL; Q9IZ87; Q9IZ87.
XX
FH Key Location/Qualifiers
FH
FT source 1. .4310
FT /db_xref="taxon:119104"
FT /mol_type="genomic RNA"
FT /virion
FT /organism="Indian peanut clump virus D"
FT /strain="D"
FT /segment="RNA-2"
FT CDS 395. .1057
FT /codon_start=1
FT /db_xref="GOA:Q9IZ87"
FT /db_xref="SPTREMBL:Q9IZ87"
FT /product="coat protein"
FT /protein_id="AAO15492.1"
FT /translation="MANISEVRRGGGHYSIASWRNHVIKQNLNHDWWIRSDRWAQLLAD
FT LRAVNYEVNSSRSEVANIINRVPKDLPADPSARFPGVVGTPGETNYSLVYYVRVEAPVR
FT EKFLGIIAAADQGKSRDVEVGRPSAPSVASGAGNQAIVPVRGVNAIRDQQPLRDGSLSF
FT RYKLVDVELASVTQFDQVLFEETFQITWIEKDASTKTTPTASTNTSPTGVAPGDPSN"
FT CDS 1058. .1966
FT /codon_start=1
FT /db_xref="SPTREMBL:Q8B101"
FT /product="P34"
FT /protein_id="AAO15493.1"
FT /translation="MSDITSLDEVGKFVSAPPLTAPYLGHILVFRVSDMSKSCFLRADF
FT SIVTSECVFLPELSVGVPLSDKRKLSVPGCPLLEGRPLLDLYNKLLVDREIVNFEGQIL
FT IRLLEPIKDQAGVVVSDFVKCADVFLWSKFGGCDSLKLWPRYQFCTRNLVDEPQKKLDG
FT LTDVVTAKEVQDLRDRVIALTAERDNLATQASSVALLSENSALKLEVSRLKAQVSQVSA
FT GNNVTNVNADAKTALQRAGFTNLEYFGNADKSAILEYMANNYSIMKDKFEREQKESNDR
FT FEQTQAFRYLNIMAERFDPYV"
FT CDS 2061. .3389
FT /codon_start=1
FT /db_xref="GOA:Q8B100"
FT /db_xref="SPTREMBL:Q8B100"
FT /product="P49"
FT /protein_id="AAO15494.1"
FT /translation="MCLLSLLSLAMSWQRKGAVDGAVFGGNGSKPLDAKKKKKNAKRAP
FT KDKAKASPEGATREEKYPPEDDYSPEFVEDFRRSVANEKFQKSERRNGYDQVRLGSDNF
FT VGDDPLKVIADEAVAAGFQATGKVMKRFPADVFERSKFIGMYDRHLTALRDKACCKGER
FT DQVQSKLIQTRTLAPTCAFLAGTVTGVPGSGKSTLLKKVQKKLKNSVCLLANKELKGDF
FT AGVPSVFSVEEMLLTAVPSKFNVMLVDEYTLVQSAEILLLQRKLEAKIVVLFGDREQGN
FT TNKLTSPEWLHVPIVFSSDLSYRFGSETAKFCSDQGFSLQGKGSEDKVVTGDYEGEGED
FT TEVNLCFTEETRKDLAEVQVEAFLVSSVQGKTFPSVSLFVREGDKQAFSDPHLRLVAIT
FT RHRKLLSIRADPEVWISFMFATREGEKVDTHCYGEEHCPDETE"
FT CDS 3355. .3723
FT /codon_start=1
FT /db_xref="SPTREMBL:Q8B0Z9"
FT /product="P14"
FT /protein_id="AAO15495.1"
FT /translation="MVKSTVPTRPNKYWPGVVAIGLVALFVFLSISNQKHSTTSGDNIH
FT KFANGGTYRDGSKCISYNRNSPLAYNGSSSNNTLFWLCLLGLSMVWIAFCGYKSLSGQW
FT QGCQHDKREGNYLFECFE"
FT CDS 3566. .4030
FT /codon_start=1
FT /db_xref="SPTREMBL:Q8B0Z8"
FT /product="P17"
FT /protein_id="AAO15496.1"
FT /translation="MEAPAITHSFGCACSDCQWSGSPFVATRVCPDNGRAVNMTKERET
FT TFLSVLNDNIWLFVVAVGILCVYFLVYGMRSTVSLPMSEFHQDLNGVSIKVAPGAPVDP
FT NVIAAIHHWQKYPFGENPNAKIVVGVINSIKRGLCMLILCVTLLLYVCHK"
XX
SQ Sequence 4310 BP; 1078 A; 856 C; 1128 G; 1248 T; 0 other;
AF447396 Length: 4310 September 11, 2003 13:47 Type: N Check: 8134 ..
1 gcattcttgc tcgactttcg tgtagcgaaa agcgtatcac gacagagcgt
51 ttaccaaccc ttgtatccaa accaggtcac cgacactctt attgtggata
101 acatttttgt atctacggtt gcgtggagtt cgattcgttc gactgagcta
151 agctctgcct ccatcctgcc gttcttgcaa gctgttattt cactctcaga
201 gaaggtactg gatttaccat cggctggcgg tattctgtca gactatcgtt
251 gtttcttgat tactgaggag ttcgtttatc gactgagttt taactctgcc
301 tcctttgtct caaggaactg cgctaggaag ctgaagacca gggctggccc
351 ttatcggtta ctgttgaact ctggcaccct ttttcaggat ttctatggct
401 aatataagtg aggtgcgcag aggtggaggt cactacagta tcgcctcgtg
451 gagaaaccat gttattaagc agaatttgaa tcacgattgg tggatcagaa
501 gtgaccgttg ggcccaacta ttagcagatt tgagggctgt gaactacgaa
551 gttaatagtt ctagatctga ggtcgcgaac attatcaatc gggtgcctaa
601 ggatttgccc gcagatcctt cggcccgatt tcctggtgta gttgggaccc
651 ctggtgagac caattattcc ttggtttatt acgtccgcgt ggaggctcct
701 gttcgtgaaa aatttttagg aataatcgcg gcggcggatc aaggaaaaag
751 tcgtgacgtt gaggttggga gacctagcgc accatctgtt gcatctggag
801 ctgggaatca ggcgatcgtc cctgtcaggg gggtgaacgc tattcgcgac
851 cagcagcctt tgcgcgacgg tagtctcagc ttccgttaca agttggttga
901 cgttgagttg gcgagtgtta cccaatttga tcaggtgctg tttgaagaaa
951 cttttcagat cacgtggata gagaaagacg ctagcacgaa gactacgcca
1001 actgcgtcta ccaacacatc acccacgggc gtagccccgg gtgatccgtc
1051 taactaaatg tcggacatca cgagtttgga tgaggtgggt aagtttgtgt
1101 ccgccccgcc tctcaccgcg ccttatttgg gacacatcct tgtgtttaga
1151 gtgtcagata tgtctaagtc ttgttttctt cgtgctgatt tttcaattgt
1201 tacctctgag tgtgttttcc tccctgagtt aagtgttggt gttcctctca
1251 gcgataagag aaagctcagt gtaccgggtt gcccgctgtt ggaaggtaga
1301 ccgttgctcg atctgtacaa caaattgttg gttgatagag aaatcgtcaa
1351 ctttgagggg caaattctta ttcgtttact cgaaccgatc aaagatcaag
1401 caggagttgt ggtgtcagac ttcgtcaagt gcgctgacgt ctttttgtgg
1451 tcgaaattcg gaggttgtga ttctttaaaa ctttggcctc gttatcagtt
1501 ttgcacgaga aatcttgtgg atgagccaca gaaaaagctg gatggtctga
1551 ctgacgtggt aacagctaag gaggtgcagg atctcagaga cagggtaatt
1601 gctttgacag ctgagcgcga taacctagcg acgcaggcta gctctgtagc
1651 gctactgtct gagaattcgg ctttgaaact tgaggtctcc cgtctgaagg
1701 cacaggtcag tcaggtaagt gccggtaaca atgttaccaa cgttaacgct
1751 gacgcaaaaa ctgcgttgca gcgagccggg tttaccaacc tcgaatattt
1801 tggtaatgcg gacaaaagcg caattttgga gtatatggca aacaactatt
1851 ctataatgaa agataagttc gagcgagagc agaaagaatc caatgatcga
1901 tttgagcaga ctcaagcctt ccgatatctg aacattatgg ctgagcgttt
1951 cgatccttat gtttaatgtc ttcttgtttg tgtagttcgg tttttgtttt
2001 gtgttattgt ttctgttgtt ttacactttc ctttttcaag gtccgtgtgt
2051 cgtttttcgt atgtgtttgc tgtctttgtt gtcactagcg atgtcttggc
2101 agaggaaggg agctgttgat ggcgctgtct ttggtggaaa tgggagtaag
2151 ccactagatg ctaagaagaa gaagaaaaac gcaaaaagag cacctaagga
2201 taaagcgaaa gcttcgcccg aaggtgctac aagggaagag aagtatcctc
2251 ctgaagatga ttactcacca gaattcgtgg aagattttcg acggagtgtg
2301 gccaacgaga agtttcaaaa aagcgagaga aggaatggtt acgaccaagt
2351 gcgacttggg tctgataact ttgtcggcga cgatcctctg aaggtaatag
2401 ctgatgaagc tgttgccgct ggttttcaag cgactggaaa ggtcatgaag
2451 agattcccgg ctgatgtctt cgagcgttcg aaatttattg gtatgtatga
2501 cagacatctc acagctctgc gcgacaaggc atgttgcaaa ggggagcgag
2551 atcaagtgca atctaaactg attcaaactc gaacgctcgc cccaacttgc
2601 gcctttctgg ctggtaccgt gaccggtgtt ccaggctcgg gaaagagtac
2651 tttattgaag aaagtgcaga agaagttgaa gaactctgtt tgtctattgg
2701 ctaataaaga gcttaaagga gactttgccg gtgtgccttc cgtattttct
2751 gttgaggaaa tgttgttaac ggctgttcct tcaaaattta atgtgatgtt
2801 ggtggatgag tacactctgg ttcaaagtgc tgaaatcttg cttcttcaga
2851 gaaagttgga agctaagatt gttgtattat tcggtgacag agagcaaggc
2901 aataccaaca agcttacaag tcctgaatgg ttgcatgtac cgatcgtttt
2951 ctccagtgac ttgagctaca gattcggtag tgagactgca aagttttgca
3001 gtgatcaggg cttctccttg caggggaagg gcagtgaaga taaggtcgtg
3051 actggtgatt acgagggcga aggagaagac acagaagtta acctttgctt
3101 cactgaagaa actaggaaag acttggcgga ggtgcaggtt gaagcttttc
3151 ttgtgtcgag cgttcaagga aaaacttttc caagcgtttc gctttttgtg
3201 cgggaaggag ataagcaagc tttctcggat ccgcatttgc gcctggttgc
3251 tataactagg cacagaaagc ttctcagtat ccgcgctgac ccagaagtct
3301 ggatcagttt tatgttcgcg actagagagg gcgagaaagt agacactcac
3351 tgctatggtg aagagcactg tcccgacgag accgaataag tattggcctg
3401 gtgtcgtagc tataggtctg gtagccttat ttgtctttct gtctatatct
3451 aatcaaaagc attcaactac ttctggtgat aatatacata aatttgcgaa
3501 cggaggtact taccgtgacg gttcaaagtg tatctcttac aacagaaact
3551 ctcctctagc gtacaatgga agctccagca ataacacact cttttggctg
3601 tgcctgctcg gactgtcaat ggtctggatc gccttttgtg gctacaagag
3651 tttgtccgga caatggcagg gctgtcaaca tgacaaaaga gagggaaact
3701 acctttttga gtgttttgaa tgataatatt tggctgtttg ttgttgctgt
3751 gggtatactg tgtgtgtact tcttggtgta cggtatgaga tccactgtga
3801 gtttacctat gtcggagttt caccaagacc tgaacggtgt tagtataaaa
3851 gttgctcctg gtgctcctgt tgaccctaat gttatagctg ctattcatca
3901 ttggcagaag tatccgtttg gtgagaatcc taatgctaag attgtcgttg
3951 gtgttataaa tagtattaag cgtggtttgt gtatgcttat actttgtgtt
4001 actttgttac tatatgtttg tcataagtaa aaggataaca aaaatgatta
4051 gaccgagatt gatcaactcg gggcggtgcg agccatagag cacggttgtg
4101 ggtttaaact taaaaccctc aagtctcatt ccctagtcat tacaaggtta
4151 attgcaaaaa cccttgtatc tgattattat gggagtgccg acaagatgtc
4201 gggagtgtca agacacgaca cttagtggct ggcgtagact gctggtacgc
4251 gaactcatag agttcgcgta ggtgcaaatc ccccgctgaa acggagcgat
4301 atccgtccca