Sequence of DPV Indian peanut clump virus
Indian peanut clump virus H segment RNA-2 coat protein P23, P38, P49, P14, and P17 genes, complete cds.
ACC No: AF447397
Dated: 2003-05-29 | Length: 4507 | CRC: -785451849
!!NA_SEQUENCE 1.0
ID AF447397 standard; genomic RNA; VRL; 4507 BP.
XX
AC AF447397;
XX
SV AF447397.1
XX
DT 02-JAN-2003 (Rel. 74, Created)
DT 29-MAY-2003 (Rel. 75, Last updated, Version 3)
XX
DE Indian peanut clump virus H segment RNA-2 coat protein P23, P38, P49, P14,
DE and P17 genes, complete cds.
XX
KW .
XX
OS Indian peanut clump virus H
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Pecluvirus;
OC Indian peanut clump virus.
XX
RN [1]
RP 1-4507
RX MEDLINE; 22422427.
RX PUBMED; 12536297.
RA Naidu R.A., Sawyer S., Deom C.M.;
RT "Molecular diversity of RNA-2 genome segments in pecluviruses causing
RT peanut clump disease in West Africa and India";
RL Arch. Virol. 148(1):83-98(2003).
XX
RN [2]
RP 1-4507
RA Naidu R.A.;
RT ;
RL Submitted (14-NOV-2001) to the EMBL/GenBank/DDBJ databases.
RL Plant Pathology, University of Georgia, Miller Plant Sciences Building,
RL Athens, GA 30602, USA
XX
DR GOA; Q82717.
DR GOA; Q8B0Z6.
DR SPTREMBL; Q82717; Q82717.
DR SPTREMBL; Q8B0Z4; Q8B0Z4.
DR SPTREMBL; Q8B0Z5; Q8B0Z5.
DR SPTREMBL; Q8B0Z6; Q8B0Z6.
DR SPTREMBL; Q8B0Z7; Q8B0Z7.
XX
FH Key Location/Qualifiers
FH
FT source 1. .4507
FT /db_xref="taxon:119103"
FT /mol_type="genomic RNA"
FT /virion
FT /organism="Indian peanut clump virus H"
FT /strain="H"
FT /segment="RNA-2"
FT CDS 503. .1129
FT /codon_start=1
FT /db_xref="GOA:Q82717"
FT /db_xref="SPTREMBL:Q82717"
FT /product="coat protein P23"
FT /protein_id="AAO15497.1"
FT /translation="MSNLSEVTRGGGHYGIEAWRNHVVSERLNSDWWIKSDRWDQLLAD
FT LRAVNFEVNSSRSEVASIINRVPKDLPAAVSARFPGAKGVLGSDTYTTLYYVHVKSDLK
FT QKFYRLIAAADQGKNRDLEVGRSSVPAATSSSSNNQAIVPSKGINAIRDQQPLRDGSLS
FT YRYDLLDIELTTVKQYDQFLFESTFSVNWIPNPAATPNAAAPGVN"
FT CDS 1129. .2148
FT /codon_start=1
FT /db_xref="SPTREMBL:Q8B0Z7"
FT /product="P38"
FT /protein_id="AAO15498.1"
FT /translation="MSVTSLNVPEKFLAAAQVNGRSAGHILVYTVSSMSKSCYVMSDFT
FT LLDSDSVFVAGASNSVPPLSNKVSLQVPGCPLIQGAELRRLYNKLVEKREIVNKDGQIL
FT IHLKAPLLNPDNSVAADYVKCADVFLWSSYGGCDTLQLWPRFQFCTDKLVDEPQKKLDG
FT LVDVITAKELQDLRDKVVSLTAERDNLRLKVNNVSDQSEITALRAEVARLKAQVTNPVT
FT PIVGSVNDEAKKAIKDAGFTNPDYFDIADKSTIVTYMVRNYAYQKGENERRQKEIDEQF
FT RWLQDYRYRWRRLINDVRPMMLVIRTVLAATRGYYEDMRVSAVDHFLNITAGGLDPHV"
FT CDS 2266. .3588
FT /codon_start=1
FT /db_xref="GOA:Q8B0Z6"
FT /db_xref="SPTREMBL:Q8B0Z6"
FT /product="P49"
FT /protein_id="AAO15499.1"
FT /translation="MCLLSVLSIAMSWQRRGTLEKAVNSAVSGGNGSKPVEIKRKGRSA
FT RGATKNEAKTWKEKYPPEDDYSPEFVDNFRQSVANEKFQRSERRDGYDQVRLGSDNFVG
FT DDPLKVIAEEAVAAGFQATGKVMKRFPADVFERSKFIGMYDRHLSALRDKACCKGERDQ
FT VQSKLIQTRTLAPTCAFLAGTVTGVPGSGKSTLLKKVQKRLKNSVCLLANKELKGDFAG
FT VPSVFSVEEMLLTAVPSKFSVMLVDEYTLVQSAEILLLQRKLEAKIVVLFGDREQGNTN
FT KLTSPEWLHVPIVFSSDLSYRFGSETAKFCGDQGFSLQGKGSEDKVVTGDYEGEGEDTE
FT VNLCFTEETKKDLAEVQVEAFLVSSVQGKTFPSVSLFVREGDKQAFSDPHLRLVAITRH
FT RKLLSIRAEPEVWISFMFPTREGEKVDTHCYGEEHCPDETE"
FT CDS 3554. .3922
FT /codon_start=1
FT /db_xref="SPTREMBL:Q8B0Z5"
FT /product="P14"
FT /protein_id="AAO15500.1"
FT /translation="MVKSTVPTRPNKYWPGVVAIGLVTLFVFLSVSNQKHSTTSGDNIH
FT KYANGGTYRDGSKCISYNKNSPLAYNGSSSNNTLFWLCLLGLSMVWIAFCGYKSLSGQW
FT QSCQHDKRERNYLFECFE"
FT CDS 3765. .4232
FT /codon_start=1
FT /db_xref="SPTREMBL:Q8B0Z4"
FT /product="P17"
FT /protein_id="AAO15501.1"
FT /translation="MEAPAITHSSGCACSDCQWSGSPFVDTRVCPDNGKVVNMTREKET
FT TFLSVLNDNLWLFVVAVGILCVVFLSVWCETHCGACLCLSFTKNLNGVSIKVAPGAPID
FT PNVIAAIHHWQKYPFGENPNAKIVVSVIDSIKRGLCMLLLCVTLLLYVCYK"
XX
SQ Sequence 4507 BP; 1156 A; 908 C; 1136 G; 1307 T; 0 other;
AF447397 Length: 4507 September 11, 2003 13:47 Type: N Check: 7872 ..
1 gcattcttgc tcgactttcg tgtagcgaaa agcgtatcaa cgacagagcg
51 tttaccatcc cttgtatcca aaccggttta cctacactct atctttgggt
101 tgtatcattg tgactttgtt attgtggagt tcgattcgtt cgactgagct
151 agcctctgcc tccacgttaa cgacttcgca ggttacggct gtatctttag
201 agagggtaac ggaattacca tcggttggcg gtattctgtc ctattaccgt
251 ggtttcccaa cccgagaagt tcttatagac tgagttttta aaactctgcc
301 tcctcggttt cggaagttca cgctgagaag ctgaagacca gggctgaccc
351 ttatcggtta ctagtcttag tttcgcgtgt gccatccgcc tcttgatttt
401 gttattgtgg agttcgattc gttcgactga gctagcctct gcctccacgt
451 taacgacttc gcaggtgttt ggccgtgaga ctagttcttt tattttccac
501 ccatgtctaa tttgtctgaa gttactcgtg gtggtggtca ctatggaata
551 gaggcgtgga ggaatcacgt tgtgagtgaa aggctcaact ctgactggtg
601 gataaaaagt gatcgctggg accagctcct agcggatttg agagccgtga
651 actttgaagt caatagttct cgctccgagg tcgcctctat tattaaccgt
701 gtgcctaaag atttacccgc tgctgtttca gcacgttttc ctggtgccaa
751 gggtgttttg ggtagcgata cttataccac cttatattac gtgcacgtga
801 aatctgatct taagcagaag ttctacaggc ttattgctgc tgctgaccaa
851 ggaaagaatc gagacttgga agtggggaga tcctctgtcc ccgcagccac
901 aagcagctca tcaaacaatc aagcgattgt acctagcaag gggatcaacg
951 caataagaga tcagcaacct ctcagagacg gatctctttc ttatcggtac
1001 gatctgttgg acatcgaact tactactgtg aaacagtacg atcagttctt
1051 gtttgaatcg acgtttagtg ttaactggat ccctaatcca gcggccactc
1101 ccaacgccgc tgccccgggg gtgaattaat gtccgtcacg tcgctcaatg
1151 tacctgagaa gtttctggcc gctgctcagg taaatggaag atctgcaggc
1201 catattcttg tatatactgt ttcttctatg tccaagtcgt gttacgtaat
1251 gagtgatttt actttgcttg attctgactc tgtatttgta gctggtgcta
1301 gtaatagtgt cccaccgctg tcgaacaaag tctctttaca ggttccgggt
1351 tgtccgttga tccagggtgc tgagcttcga agattgtata acaagttggt
1401 tgagaagaga gagattgtta ataaagatgg tcagatactc attcatctaa
1451 aagctccgtt gttaaaccct gacaattcag tcgcagcaga ctacgttaaa
1501 tgcgcagatg tattcctttg gtcgtcctac ggtggttgtg atacgttgca
1551 gttgtggcca cgctttcaat tctgtactga taaacttgtg gatgagccac
1601 agaaaaagct ggatgggttg gttgacgtga taacagctaa ggagttgcag
1651 gatctccgag acaaggtggt gtctttgact gcagagagag acaatttacg
1701 actgaaagta aacaatgtct ctgatcagtc tgagatcacc gcattgcgag
1751 cagaggtagc acgtctgaag gcacaagtca ccaaccccgt tactcccatc
1801 gttgggagtg ttaatgatga agcgaagaag gcgataaaag acgctggttt
1851 caccaacccc gactacttcg acatagcgga caagagcacg attgtgacgt
1901 acatggtgcg caattacgca tatcaaaaag gggagaatga gcggaggcaa
1951 aaagaaatag atgagcaatt cagatggttg caggattatc ggtatcgctg
2001 gcgaagatta atcaacgacg tgagacccat gatgctagtg atcagaactg
2051 ttttagctgc taccagaggt tattatgaag atatgcgggt atcagcggtc
2101 gaccactttc ttaacatcac tgctggaggt cttgatcctc atgtttaatt
2151 gagaactttg attgactttg gtttgtttat tttgtgtttt gtttttgttt
2201 ttgttgtttt tgtctttgtt tgagtttaca cttttgttct tcaacgttag
2251 tgtgttgttt ttcgtatgtg tttgctgtct gtgctgtcaa ttgcaatgtc
2301 ttggcaaagg agaggaactt tggagaaggc tgtcaatagt gctgtgtctg
2351 gtggaaatgg gagcaaacca gtagagatca agaggaaagg aagaagtgca
2401 agaggagcga ccaagaacga ggcgaaaacg tggaaagaga agtatcctcc
2451 agaagatgat tattcacctg agtttgtgga caacttccga cagagtgtcg
2501 ccaacgagaa gtttcaaagg agtgaacgaa gggatggtta cgaccaagtg
2551 cgacttggtt ctgacaactt cgtcggtgac gatcctctaa aggtgatagc
2601 agaggaagcc gtcgccgctg gttttcaagc gactggaaag gtcatgaaaa
2651 gattcccggc tgacgtcttc gagcgatcaa aatttatcgg tatgtatgac
2701 agacatcttt cggctctgcg cgacaaagca tgctgcaagg gagagcgcga
2751 ccaagtgcag tctaagttga ttcagactcg aacgctcgcc ccgacttgcg
2801 cttttctagc tggcaccgtt accggtgttc ctggctccgg aaagagtact
2851 ttactgaaga aagtgcagaa gaggctgaag aattctgtct gtctgttagc
2901 taacaaagag cttaaaggag atttcgccgg tgtaccttcc gtattttctg
2951 ttgaggagat gttgttaacg gctgttcctt cgaaatttag tgtgatgttg
3001 gtggatgagt acactctagt tcaaagtgct gaaatcttgc ttcttcaaag
3051 aaaattggaa gccaaaattg ttgtattatt tggtgataga gagcaaggca
3101 ataccaacaa gctcacaagt cctgagtggt tgcatgtacc aatcgttttc
3151 tctagtgact tgagctacag attcggtagc gagaccgcaa agttttgtgg
3201 tgatcagggc ttctccctgc aggggaaagg cagtgaagat aaagtcgtga
3251 ccggtgatta cgaaggcgaa ggtgaagaca cagaggttaa tctttgcttc
3301 acggaagaaa ctaagaaaga tttggcagaa gtgcaggtag aggcgtttct
3351 tgtatcgagc gttcaaggaa aaactttccc aagcgtttcg ctttttgtgc
3401 gagaaggaga taagcaagct ttctctgacc cgcatttgcg cttggtagcg
3451 attactaggc acaggaagct tctcagtatc cgcgccgaac cagaagtctg
3501 gatcagtttt atgttcccga ctagagaggg tgaaaaagta gatactcatt
3551 gctatggtga agagcactgt cccgacgaga ccgaataagt attggcctgg
3601 cgttgtagcc ataggtttgg taactttatt tgtctttctg tccgtatcca
3651 atcaaaagca ctcaacaact tctggtgata atatacataa gtatgcaaac
3701 ggaggtactt accgtgacgg ttctaagtgt atttcttaca ataagaactc
3751 tcctctagcg tataatggaa gctccagcaa taacacactc ttctggttgt
3801 gcctgctcgg actgtcaatg gtctggatcg ccttttgtgg atacaagagt
3851 ttgtccggac aatggcaaag ttgtcaacat gacaagagag aaagaaacta
3901 cctttttgag tgttttgaat gataatctct ggctgtttgt tgttgctgta
3951 ggtatactat gtgttgtatt tcttagtgta tggtgtgaga cacactgtgg
4001 agcgtgccta tgtctgagtt tcaccaagaa cttgaacggt gttagtataa
4051 aggttgctcc tggtgcaccc attgacccca atgtcatagc cgctatccat
4101 cattggcaga agtatccttt tggcgaaaat cccaatgcta aaattgttgt
4151 cagtgttata gatagtatta agcgtggttt gtgtatgctt ttattatgtg
4201 tcactctatt gttgtatgtg tgttacaaat aaaatcaaaa tgattaatcg
4251 gaactgatca ctccgaggtg gtgcttacca taaagcaccg gtgtgtgggt
4301 ttcaacttaa aaccctctag tcttattccc tagtcattac aaggttaatt
4351 gcaaaaaccc ttgtatctga ttattatggg agtaccgaca agatgtcggg
4401 agtgtcaaga cacgacactt agtggctggc gtaaactgct ggtgcgcgaa
4451 ctcatagagt tcgcgtaggt gcaaatcccc cgccgatacg gagcgatatc
4501 cgtccca