Sequence of DPV Peanut clump virus
Peanut clump virus Ni segment RNA-2 coat protein, P37, P47, P14, and P17 genes, complete cds.
ACC No: AF447398
Dated: 2003-05-29 | Length: 4305 | CRC: 879069226
!!NA_SEQUENCE 1.0
ID AF447398 standard; genomic RNA; VRL; 4305 BP.
XX
AC AF447398;
XX
SV AF447398.1
XX
DT 02-JAN-2003 (Rel. 74, Created)
DT 29-MAY-2003 (Rel. 75, Last updated, Version 3)
XX
DE Peanut clump virus Ni segment RNA-2 coat protein, P37, P47, P14, and P17
DE genes, complete cds.
XX
KW .
XX
OS Peanut clump virus Ni
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Pecluvirus;
OC Peanut clump virus.
XX
RN [1]
RP 1-4305
RX MEDLINE; 22422427.
RX PUBMED; 12536297.
RA Naidu R.A., Sawyer S., Deom C.M.;
RT "Molecular diversity of RNA-2 genome segments in pecluviruses causing
RT peanut clump disease in West Africa and India";
RL Arch. Virol. 148(1):83-98(2003).
XX
RN [2]
RP 1-4305
RA Naidu R.A., Sawyer S., Deom C.M.;
RT ;
RL Submitted (14-NOV-2001) to the EMBL/GenBank/DDBJ databases.
RL Plant Pathology, University of Georgia, Miller Plant Sciences Building,
RL Athens, GA 30602, USA
XX
DR GOA; Q8B0Z1.
DR GOA; Q8B0Z3.
DR SPTREMBL; Q8B0Y9; Q8B0Y9.
DR SPTREMBL; Q8B0Z0; Q8B0Z0.
DR SPTREMBL; Q8B0Z1; Q8B0Z1.
DR SPTREMBL; Q8B0Z2; Q8B0Z2.
DR SPTREMBL; Q8B0Z3; Q8B0Z3.
XX
FH Key Location/Qualifiers
FH
FT source 1. .4305
FT /db_xref="taxon:188887"
FT /mol_type="genomic RNA"
FT /virion
FT /organism="Peanut clump virus Ni"
FT /strain="Ni"
FT /segment="RNA-2"
FT CDS 402. .1025
FT /codon_start=1
FT /db_xref="GOA:Q8B0Z3"
FT /db_xref="SPTREMBL:Q8B0Z3"
FT /product="coat protein"
FT /protein_id="AAO15502.1"
FT /translation="MTNIAEVSRGGGHYGVEPWRQHIVKNGINTDWWIRLDHWANLLAS
FT LRGVNFEVNSSRSQVADFINRVPKDLPAGVSARFPGPRGTLGSTNYNEVYFVRVKPDLK
FT QKLLSLIAAADQGKNRDVEIGRPNAPVVTTGAGGNQAIVAQRGVNTVRDQQPLRDGSLH
FT YRFLLQDIEVFSVEQFDRALFEETFSLNWTVVAPAAGGGGGGAP"
FT CDS 1022. .1981
FT /codon_start=1
FT /db_xref="SPTREMBL:Q8B0Z2"
FT /product="P37"
FT /protein_id="AAO15503.1"
FT /translation="MSDILVVDVPELFLAVSQEDRFPGHVTVHKLNSFSKSCVLRADFD
FT PVPFGMVFVVGAVVGSVPLSVHRRLSVKGCPVVIEGEGLLKLYEKLRVHREIVNMHGQV
FT MIGLKQGLYDVRGVLKAEYIRCSDVFLWSDFGGCLPLRLWSRYVFCTDRFVDDPQLVLD
FT GREGEEINVLRKEALELQRQLKEQKDRVVELQSQISKQQGAGVGASSSTEASIRRDVEY
FT WQRTAMHWQEEVKKLKYSWEITEKDRLKLGSEKNRAEYEVKDLTISKNRLQYEVDQLRK
FT RRDELITQSVKDRNSYERNVDELNGIIKRYSEKYGPYY"
FT CDS 2155. .3390
FT /codon_start=1
FT /db_xref="GOA:Q8B0Z1"
FT /db_xref="SPTREMBL:Q8B0Z1"
FT /product="P47"
FT /protein_id="AAO15504.1"
FT /translation="MEWRRVSSKKRLEKKVSDMDAEQATDFLLGEIDAQREFERKLDKK
FT LQDNRRKFGEKSEKVAGHNQIKLGSENYIGEDPLKVLSEEALKAGFQHTGRVMRRFPAD
FT IFEKSRFIGMYDRHLTSLREKACCKKERDQVQSKLIQLRQLQPSCGFLAGTVSGVPGSG
FT KSTLLKNVQKKLRNSVCLLANKELKGDFAGVPSVFSVEEMLLSAVPSNFNIMLVDEYTL
FT TQSAEILLLQRKLGAKIVVLFGDREQGNTNTLTSPEWLHVPIIFSSDSSHRFGLETAKF
FT CEDQGFILEGKGGEDRVVKGDYEGEGEETEVNLCFTEETKADLAEVQVEALLVSSVQGR
FT TFPSVSLFVRENDKPAFSDPHLRLVAITRHRKLLSIRADPEVWVSFMFATREGEEVDTH
FT CYGEEHRPDEAE"
FT CDS 3356. .3724
FT /codon_start=1
FT /db_xref="SPTREMBL:Q8B0Z0"
FT /product="P14"
FT /protein_id="AAO15505.1"
FT /translation="MVKSTVPTRPNKYWPGVVAIGLVSLFIFLSVSNQKHSTTSGDNIH
FT KFSNGGTYRDGSKCITYNRNSPLAYNGSSSNNTLFWLCLLGLSMVWVAYCGYKSVSGQW
FT HSCQHDKSERNFLFECFE"
FT CDS 3567. .4028
FT /codon_start=1
FT /db_xref="SPTREMBL:Q8B0Y9"
FT /product="P17"
FT /protein_id="AAO15506.1"
FT /translation="MEVPAITHSSGCVCSDCQWSGLPTVDTRVCPDSGTHVNTTKARET
FT SFLSVLNDNVWLFVVAAAMLCLYFIMSQPSTNIAYTEFYQDLNSFSMKLAPGVPIDPSV
FT IAAVRSWQKYPFGTDPREKIVSSIVSGLKHSLFMLLLAIVLLVYVCHKP"
XX
SQ Sequence 4305 BP; 1126 A; 790 C; 1155 G; 1234 T; 0 other;
AF447398 Length: 4305 September 11, 2003 13:47 Type: N Check: 6173 ..
1 gtattcggtt ctcttacagt gtagcgtgaa gcggagcacg actagagacc
51 ataccatccc ttgtatccaa accacttccc taaactttgg ggtgaagaaa
101 ggtgtctaac gacggttagg agtgagagag tttcgtctgt tttttcagct
151 cgactgggtt cgtccctgcc tctctcactt gctaccattt tcgtggatta
201 cctgtactcg ctctaaagac gggggtggaa ctaccatcgg ttggcggtgt
251 tcttgtctgt cgtctgtgac gacgttggat aactgtaagg ttctcttcgt
301 gagactgagc ttgtctctgc cctttagttg ttctgacatt ttcgtccgtg
351 gcgaagcttg aaaaccaggg ctgaccttta tcggttactt gattaatcct
401 tatgactaac attgcagagg ttagccgggg tggaggtcac tacggtgttg
451 aaccctggcg ccagcatatc gtaaagaacg ggattaatac agactggtgg
501 attcgtttag atcattgggc gaatttgcta gcatctttaa gaggggtaaa
551 ctttgaagtt aacagctcac gttcgcaagt tgcggatttc attaacagag
601 ttcctaagga cttacctgcg ggcgttagtg caaggtttcc cgggcctcgt
651 ggtactcttg gtagcacaaa ttacaacgag gtgtattttg ttcgagtgaa
701 gcctgatctc aaacagaagt tgttaagttt aatagctgct gctgaccaag
751 gtaagaaccg tgacgttgaa attggtcgcc ccaacgctcc agttgtgacc
801 actggcgcgg gtggtaacca agctatcgta gctcaaagag gggtgaatac
851 agtgagagat caacagcctc tgagagatgg ttctttgcac tatcggttcc
901 ttttgcagga cattgaagtt tttagtgtcg agcagtttga tcgagcgtta
951 ttcgaggaga cttttagcct caattggact gtcgtcgctc ctgctgccgg
1001 tggtggtggg ggaggtgcac catgagtgat atccttgtgg ttgatgttcc
1051 tgagttattc ttggccgtat ctcaggaaga caggtttcct ggccatgtta
1101 ccgttcataa gttaaatagt ttttctaagt cttgtgtttt gcgtgccgac
1151 ttcgaccctg taccttttgg tatggtgttc gttgttggtg ctgtggtggg
1201 tagcgttcct ttgtctgttc atcgtaggtt atctgttaaa ggttgtcctg
1251 tggtaattga gggagagggg cttcttaagt tgtatgagaa actgcgggtg
1301 catcgtgaga tcgtaaatat gcatggtcaa gtcatgattg gtttaaagca
1351 aggtctgtac gatgtacgag gtgtcttaaa agcagaatat atcaggtgct
1401 cggatgtatt tttgtggtcg gacttcgggg gttgcttacc tttgagatta
1451 tggtctcgtt atgtgttttg tacggacagg tttgttgacg atccgcagtt
1501 ggtcttagat ggtcgtgaag gggaggagat aaacgtcctg cgtaaagaag
1551 cgcttgagct ccagagacag ttgaaagagc aaaaggatcg ggtggtcgaa
1601 ttgcaatcac agatctctaa gcaacagggt gccggcgtgg gcgcatcttc
1651 ctctactgag gcgtcaataa ggcgcgacgt ggaatactgg cagcgaactg
1701 caatgcattg gcaggaagag gtgaaaaagc ttaagtactc ttgggagata
1751 acggaaaaag ataggttaaa gctgggttct gagaaaaacc gagctgaata
1801 tgaggtaaaa gacctcacta tctccaaaaa caggttgcaa tacgaagtag
1851 accaattaag aaagagacga gacgagctga taacgcagtc tgtgaaagac
1901 aggaattcct atgaacgtaa tgttgatgaa ctaaatggaa taatcaagcg
1951 ttatagtgaa aagtatggcc cctattacta atgttatcgg gcaggattaa
2001 ttttaacaga gtgagtgttt ttgttattgg tttttaaatt tctttcgttg
2051 tcggtgtttc ttgttatttg atactgtcga tttttagtct tgagtatgtc
2101 gtattttctc ttaagcgacg gtcgttccaa gtttgttaac aacttgcagt
2151 cccaatggag tggaggagag tgtctagtaa gaaaaggttg gaaaagaagg
2201 tgagtgatat ggatgctgag caggctaccg atttccttct aggagaaatt
2251 gacgcgcagc gcgagttcga aaggaaactt gataaaaagc tgcaggataa
2301 taggagaaaa ttcggtgaga agtcagaaaa agtggctggt cataaccaga
2351 tcaaattggg gtcagagaat tatataggtg aagatcctct gaaagtgtta
2401 tctgaagaag ctctaaaggc cggttttcaa cacactggca gagttatgag
2451 gaggtttcct gcagatatat ttgaaaaatc gagattcatt ggcatgtatg
2501 ataggcatct tacttctctg cgtgaaaaag catgttgcaa gaaagagcgt
2551 gaccaggttc aatctaagct gattcaactg cggcagctgc aaccatcttg
2601 cggtttcttg gcaggaactg tgagtggcgt tccaggctct gggaaaagca
2651 cgttattgaa gaatgtgcag aagaagttaa ggaattctgt ctgcttactt
2701 gctaataagg agctgaaagg agattttgcg ggcgtacctt cggtgttttc
2751 agtggaggaa atgttactgt cggccgtgcc atcaaatttt aatattatgt
2801 tggtcgatga gtatactttg actcaaagtg ctgaaatctt gctcttgcaa
2851 aggaagttgg gagccaagat tgttgtatta tttggtgaca gagaacaagg
2901 taacacaaat acgttgacaa gtcctgagtg gttacacgtg cccatcattt
2951 tctcaagtga ctcaagccac agattcggtc tagaaactgc gaagttttgc
3001 gaagaccagg gtttcatcct agaaggaaaa gggggcgaag atagggttgt
3051 gaagggtgac tacgaagggg aaggagagga gacggaagtt aatctctgct
3101 tcaccgaaga gacaaaggcc gatctcgctg aagtgcaggt ggaagctctc
3151 cttgtttcta gcgtccaagg taggacgttt ccaagtgtat ccttgtttgt
3201 gagggaaaac gataagcctg ctttttcgga ccctcatttg cgcttggttg
3251 ctattactag gcacaggaag ctattaagca ttagggcgga tccggaggtt
3301 tgggtcagct ttatgtttgc aacgcgagaa ggtgaagagg tagacaccca
3351 ttgctatggt gaagagcacc gtcccgacga ggccgaataa atactggcca
3401 ggggtagtag ctataggtct ggtgtctttg tttatctttt tatccgtgtc
3451 aaaccaaaaa cactccacta cttctggtga taacatacat aaattttcta
3501 acggtggaac gtaccgagac gggtccaagt gcataacata taacagaaac
3551 tcccctttgg cttataatgg aagttccagc aataacacac tcttctggtt
3601 gtgtctgctc ggactgtcaa tggtctgggt tgcctactgt ggatacaaga
3651 gtgtgtccgg acagtggcac tcatgtcaac acgacaaaag cgagagaaac
3701 ttcctttttg agtgttttga atgataatgt ttggttgttt gttgttgctg
3751 ctgccatgct gtgtttgtat tttattatga gtcaacctag cacaaacata
3801 gcttacacgg agttctatca ggatctgaat agcttcagta tgaaattggc
3851 cccgggcgta cctatcgatc caagcgttat tgcagctgta agaagttggc
3901 aaaaatatcc ctttgggacc gatcctagag agaagatagt aagtagtatt
3951 gtaagtgggt taaaacacag tttgtttatg ttactactcg cgattgtgtt
4001 acttgtttat gtgtgtcata aaccttaaaa acacaaaaat gattgaaccg
4051 agactgatca actcggggcg gtgcgagcca tagagcacgg ttgtgggttt
4101 aaacttaaaa ccctctagtc tcattcccta gctattataa ggttaattgc
4151 aaaaaccctt atatctggcc gagatgggag tgccgacaag ttgtcgggag
4201 tgtcaagaca cgacacttag tggctggcgt agactgctgg tatgtgaact
4251 catagagttc acataggtgc aaatcccccg ctgaaacgga gcgatatccg
4301 tccca