Sequence of DPV Peanut clump virus
Peanut clump virus N segment RNA-2 coat protein, P40, P49, P14, and P17 genes, complete cds.
ACC No: AF447399
Dated: 2003-05-29 | Length: 4553 | CRC: -880182970
!!NA_SEQUENCE 1.0
ID AF447399 standard; genomic RNA; VRL; 4553 BP.
XX
AC AF447399;
XX
SV AF447399.1
XX
DT 02-JAN-2003 (Rel. 74, Created)
DT 29-MAY-2003 (Rel. 75, Last updated, Version 3)
XX
DE Peanut clump virus N segment RNA-2 coat protein, P40, P49, P14, and P17
DE genes, complete cds.
XX
KW .
XX
OS Peanut clump virus N
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Pecluvirus;
OC Peanut clump virus.
XX
RN [1]
RP 1-4553
RX MEDLINE; 22422427.
RX PUBMED; 12536297.
RA Naidu R.A., Sawyer S., Deom C.M.;
RT "Molecular diversity of RNA-2 genome segments in pecluviruses causing
RT peanut clump disease in West Africa and India";
RL Arch. Virol. 148(1):83-98(2003).
XX
RN [2]
RP 1-4553
RA Naidu R.A.;
RT ;
RL Submitted (14-NOV-2001) to the EMBL/GenBank/DDBJ databases.
RL Plant Pathology, University of Georgia, Miller Plant Sciences Building,
RL Athens, GA 30602, USA
XX
DR GOA; Q8B0Y6.
DR GOA; Q8B0Y7.
DR GOA; Q8B0Y8.
DR SPTREMBL; Q8B0Y4; Q8B0Y4.
DR SPTREMBL; Q8B0Y5; Q8B0Y5.
DR SPTREMBL; Q8B0Y6; Q8B0Y6.
DR SPTREMBL; Q8B0Y7; Q8B0Y7.
DR SPTREMBL; Q8B0Y8; Q8B0Y8.
XX
FH Key Location/Qualifiers
FH
FT source 1. .4553
FT /db_xref="taxon:188886"
FT /mol_type="genomic RNA"
FT /virion
FT /organism="Peanut clump virus N"
FT /strain="N"
FT /segment="RNA-2"
FT CDS 423. .1124
FT /codon_start=1
FT /db_xref="GOA:Q8B0Y8"
FT /db_xref="SPTREMBL:Q8B0Y8"
FT /product="coat protein"
FT /protein_id="AAO15507.1"
FT /translation="MPNINLGHLGNGHYSEDVFEEKIYEAGVDQDWWIEQSNYDKLLSG
FT LRAVNFEVNSSRQQVAKLINNVDKDLPANPGVRFPASRGTLGSADYKPYRFRRIDSTNR
FT GYFEDLVRISDQGKSRDTEINRPAAPTVGSNSQGTSLANNRGLSVIRDEQPLRDGAQNF
FT GHTFTALSLSNIPTYNQRKFEREFSLSWTAASGHHTTGTGAGTSGSGTGSGTGTGGARP
FT TTTGGNTAGNP"
FT CDS 1124. .2182
FT /codon_start=1
FT /db_xref="GOA:Q8B0Y7"
FT /db_xref="SPTREMBL:Q8B0Y7"
FT /product="P40"
FT /protein_id="AAO15508.1"
FT /translation="MGTFILDDPSLFIVPGRVFREAQGYLRIFRCVDYNSKSNIVGSDF
FT QWVGDIDVLKLPVIYDSLGNVLVKQQVTHDDIFVDPCSCPIKGNDLLRLYQKLRKYHMI
FT VNSAGQVMLALDDKEGKVYADESKKVLVSEYLRCADVFLWSEFGAPADSKLCKLYVRFQ
FT LFTDHRVDDLQQELEDCRKKPNSPATVDSKHQKLERQLSDLKKKLADEEAKVKEKVREV
FT TELKSKVKDLEAELADCKKQSVGGGSKSDVEACEARWKKVVADMSESHQRDNDRHWKYR
FT NDLSEKWAACEAEKRKYGQRVNDALATIGQIKAQLLLQYENTTRYNWGTNWFHQWVKGF
FT ADGIDVGNGKIN"
FT CDS 2332. .3633
FT /codon_start=1
FT /db_xref="GOA:Q8B0Y6"
FT /db_xref="SPTREMBL:Q8B0Y6"
FT /product="P49"
FT /protein_id="AAO15509.1"
FT /translation="MVKKGTKVSEAMWQRKFNADKEELRKKVDGMKKDAAVDYLLGRID
FT MQREAEKLLGGNLPEETFSERAPVNRTETDFKKQQSADCKEPVKLGSDKFVGEDPLKLI
FT AKAALEAGFSATGRVMKRFPADVFEKSKFIGMYDRYLMNLREKACCMEERKKVQSKLIQ
FT LRTLPPTTSFLAGTVTGVPGSGKSTLLKTIQKELPNSVCLLANKELKNDFAGVPAVFSV
FT EEMLLSAVPSHFNVMLVDEYTLMQSAEILLLQRKIEARIVVLFGDREQGNTNKLTSPEW
FT LHVPIIFSNDSSFRFGSQTAEFCREQGFNLQGQGQDDKVIKGEYEGEGEDTDVNLCFTE
FT ETRQDLLEVGVDAFLVENVQGKTFSSVSLFVREGDKFAYSNPHLRLVAITRHRRLLVLR
FT ADPEVWVSFMFATREGEQADTHCYGEEHCPNETQ"
FT CDS 3599. .3967
FT /codon_start=1
FT /db_xref="SPTREMBL:Q8B0Y5"
FT /product="P14"
FT /protein_id="AAO15510.1"
FT /translation="MVKSTVPTRPNKYWPGVVAIGLVSLFIFLSVSNQKHSTTSGDNIH
FT KFSNGGTYRDGSKCITYNRNSPLAYNGSSSNNTLFWLCLLGLSMVWVAFCGYKSVTGQW
FT GGCQHDKREGNYLFECFE"
FT CDS 3810. .4274
FT /codon_start=1
FT /db_xref="SPTREMBL:Q8B0Y4"
FT /product="P17"
FT /protein_id="AAO15511.1"
FT /translation="MEVPAITHSSGCACSDCQWSGLPSVATKVSQDNGVDASMTKERET
FT TFLSVLNDNIVLFAIAGLMLAVFLFMNRSVADPVAYSEFHQDLNGVSIKLAAGVPIDPA
FT LVAAVHHWQKLPFGEDPRVKLFGIVLQCVKSSIMLLLVCVCLLMVVCHYR"
XX
SQ Sequence 4553 BP; 1239 A; 866 C; 1173 G; 1275 T; 0 other;
AF447399 Length: 4553 September 11, 2003 13:47 Type: N Check: 3870 ..
1 gtattcggtt ctcttacagt gtagcgtgaa gcggagcacg actagagacc
51 ataccatccc ttgtatccaa actacatctc tacactccga agtgctgcga
101 ggtgtccaac gacggttagg acttaaagag tttcgtctgt ggtgtaaact
151 gcagctcgac tgggttcgtc cctgcctctt tttgttgcta ctattttcgt
201 ggattacttc tatctcttcg gagaggaggg tagaaatacc atcggttggc
251 ggtgttctgg cttctgtgcg ttgtgacgtc ggcctgttgt gcggttctct
301 tcgtgagact gagtttatct ctgcccgccg acagccaccg gcaacttcac
351 ttcccgctga agttgaatac cagggccggc ctttatcttt aaaaataaaa
401 acaaaaataa aaattctcaa ctatgcctaa catcaatctt ggtcacttag
451 gtaacggtca ttacagtgag gacgtattcg aggaaaagat atatgaagca
501 ggagttgatc aagattggtg gattgaacag agcaattacg ataaattgct
551 aagtggtctt agagctgtga actttgaagt gaatagttct cggcagcagg
601 tggcgaaact tatcaacaac gtcgacaagg atttgcctgc gaatcctggt
651 gtcaggttcc ctgctagtcg aggcactttg ggctctgcag attacaaacc
701 gtaccgtttt cggcgcatcg actcgaccaa tcgaggatat tttgaggatt
751 tggtgcgaat ctcagatcaa ggtaaatcac gtgacactga gattaaccga
801 cctgctgctc ccaccgttgg ttcgaattcg caaggtacga gtctagcgaa
851 caatagaggt ttgagtgtga tacgcgacga acagccgctg agagacggag
901 cacaaaactt tggtcacacg ttcactgctc tgtcgttgtc taatattcct
951 acttacaatc agcgtaaatt tgaaagggaa tttagtctta gttggacggc
1001 ggctagcggt caccacacca ctggtactgg tgctggtact tctggttctg
1051 gcactggttc cggcacgggt acaggaggag cgcgacctac tactactggc
1101 ggtaataccg ctggtaatcc ttgatgggca ccttcattct tgatgatcct
1151 tccctgttca tagtcccggg gagggtattc agagaagcgc agggctattt
1201 acgtattttc cgttgtgttg attataatag taaatctaat atagtcggta
1251 gtgatttcca gtgggttggt gacatcgatg ttttgaaact tcctgttata
1301 tacgactctc tgggcaacgt actagtgaag caacaggtaa ctcacgatga
1351 tatatttgtc gatccctgtt cgtgtcccat aaaaggtaac gatcttttga
1401 gattgtatca aaagctgcgc aaataccaca tgattgttaa tagtgctggt
1451 caggtaatgc ttgcccttga cgataaggaa ggaaaagttt atgctgatga
1501 gtcgaagaaa gttctggtta gtgagtatct gagatgtgcg gatgtgtttc
1551 tctggtctga gtttggagcc cctgcagatt cgaagttgtg caagttgtat
1601 gttaggttcc agctgttcac cgatcatagg gtggacgatc tccagcaaga
1651 gttggaggat tgcaggaaga agcctaactc gcctgccact gtcgatagca
1701 agcaccagaa gctggagcga caattatctg acctgaagaa gaaactcgct
1751 gacgaagagg ctaaggttaa ggagaaggtg agagaagtga ctgaattaaa
1801 gtcaaaagtc aaggatctgg aagctgaact tgccgattgt aagaagcagt
1851 ctgtgggagg tggttctaag tcagacgtgg aagcctgtga ggctcgatgg
1901 aaaaaggttg tagctgatat gtctgaaagc caccagcgcg ataacgacag
1951 gcattggaaa tacaggaatg acctatcaga gaagtgggca gcctgcgaag
2001 cggaaaagag gaagtacggg cagcgggtaa acgatgcatt ggccacaatt
2051 ggtcagataa aagcccaact tctacttcag tacgaaaata ctactcgcta
2101 caattggggg acgaattggt tccaccaatg ggtgaaaggt tttgccgatg
2151 ggatagacgt gggtaatggg aagattaatt agcgttgttt gtgaatggtt
2201 tatttgtttg tgtgaatttg tttctttaaa ttttgttgag tttatttata
2251 tttacacttt tctattttct agttttgtgt gttgtttttc tttcttgctt
2301 attttattac aggatccttt caacattgag aatggttaag aagggtacta
2351 aagtttcgga agcgatgtgg cagcgaaaat tcaacgcaga taaagaagaa
2401 ctccgcaaga aagtagatgg tatgaaaaaa gatgctgcgg ttgattacct
2451 tcttgggagg atcgatatgc agagggaggc tgaaaagcta cttggcggta
2501 atcttccgga agaaaccttt tctgaaagag cacctgtgaa cagaactgaa
2551 acggatttta aaaaacaaca atctgcagac tgtaaagaac cagtgaagct
2601 aggctctgac aagtttgtcg gcgaagatcc tttaaagctt atcgcaaaag
2651 cggctttgga ggcaggattt tctgccactg gtagggtgat gaagagattt
2701 cctgcagatg tttttgaaaa atcaaaattt ataggtatgt atgataggta
2751 cctcatgaac ttgagagaga aggcgtgttg tatggaggag cgtaaaaagg
2801 tgcaatctaa gttaattcaa cttagaactt tgcctcctac gacttcgttc
2851 cttgccggta ccgtcaccgg tgttcctggg tctggtaaga gtacgctatt
2901 aaagacgatc caaaaggaat taccaaactc agtctgttta ttagccaaca
2951 aggagctgaa gaatgatttt gccggcgtgc cggctgtatt ttccgttgag
3001 gagatgttgc ttagtgctgt tccatctcat tttaacgtaa tgttggttga
3051 tgaatacacc ttgatgcaaa gtgctgaaat cttgctttta cagagaaaaa
3101 ttgaagctag gattgttgta ttatttggag acagagagca aggtaacacc
3151 aataagctta caagtcctga atggttgcac gttcctataa tctttagcaa
3201 cgatagtagc tttaggttcg gaagtcaaac tgctgagttc tgccgagaac
3251 agggctttaa tttgcaaggc caaggtcaag acgacaaagt gattaaaggc
3301 gagtacgagg gtgagggcga agatactgat gtaaatttat gcttcacgga
3351 agagacaagg caagatttat tagaagtggg tgtcgacgca tttctggttg
3401 agaacgtcca gggaaaaacc ttttctagtg tttcattgtt tgtgagggaa
3451 ggagataagt tcgcttactc aaaccctcat ttgcgactcg tcgctatcac
3501 tagacatagg agactgctgg tactaagggc cgacccagaa gtgtgggtaa
3551 gtttcatgtt cgctacccga gagggagaac aggctgacac tcactgctat
3601 ggtgaagagc actgtcccaa cgagacccaa taagtactgg cctggagtag
3651 tggctatagg acttgtttcg ctatttatct ttctttctgt atctaatcag
3701 aagcactcta ctacatcagg agataatata cataagtttt caaacggtgg
3751 tacttacaga gacgggtcca agtgtattac ttataatagg aattcgcctt
3801 tagcttacaa tggaagttcc agcaataaca cactcttctg gttgtgcctg
3851 ctcggattgt caatggtctg ggttgccttc tgtggctaca aaagtgtcac
3901 aggacaatgg ggtggatgcc agcatgacaa aagagaggga aactaccttt
3951 ttgagtgttt tgaatgataa tattgtgctg tttgctattg ctgggttaat
4001 gctagccgtg ttcctattta tgaatagaag tgtggctgat ccggtggcgt
4051 actccgagtt tcaccaagac ctgaatggag taagtataaa gttagctgcg
4101 ggagtaccca tagaccccgc gttggtggcc gctgtacatc actggcagaa
4151 actacctttc ggtgaggatc ctcgtgtcaa actattcggt attgtactac
4201 agtgtgtaaa atctagtatt atgctattac tagtttgtgt gtgtttgtta
4251 atggttgtgt gtcactaccg ctaaacaaaa acaaaaatga ttatgctgag
4301 actgatcaac tcagggcggt gcgagccaaa gagcacggtt gtgggtttaa
4351 acttaaaacc ctcgagtctc acgtcctagc tgttatagag ttaattgcaa
4401 aaacctctat atccggctat gatggatgtg ccgacaagat gtcgggagtg
4451 tcaagacacg acacttagtg gctggcgtag actgctggtg cgcaaactca
4501 tagagtttgc gtaggtgcaa atcccccgtc ctaacggagc gatatccgtc
4551 cca