Sequence of DPV Crimean-Congo hemorrhagic fever virus
Crimean-Congo hemorrhagic fever virus strain IbAr10200 glycoprotein precursor, gene, complete cds.
ACC No: AF467768
Dated: 2005-09-26 | Length: 5366 | CRC: 1030161083
ID AF467768 standard; genomic RNA; VRL; 5366 BP.
XX
AC AF467768;
XX
SV AF467768.2
XX
DT 06-JUN-2002 (Rel. 72, Created)
DT 26-SEP-2005 (Rel. 85, Last updated, Version 5)
XX
DE Crimean-Congo hemorrhagic fever virus strain IbAr10200 glycoprotein
DE precursor, gene, complete cds.
XX
KW .
XX
OS Crimean-Congo hemorrhagic fever virus
OC Viruses; ssRNA negative-strand viruses; Bunyaviridae; Nairovirus.
XX
RN [1]
RP 1-5366
RX DOI; 10.1128/JVI.76.14.7263-7275.2002.
RX PUBMED; 12072526.
RA Sanchez A.J., Vincent M.J., Nichol S.T.;
RT "Characterization of the glycoproteins of crimean-congo hemorrhagic Fever
RT virus";
RL J. Virol. 76(14):7263-7275(2002).
XX
RN [2]
RP 1-5366
RA Sanchez A.J., Vincent M.J., Nichol S.T.;
RT ;
RL Submitted (11-JAN-2002) to the EMBL/GenBank/DDBJ databases.
RL Special Pathogens Branch, DVRD, NCID, Centers for Disease Control and
RL Prevention, 1600 Clifton Road, Atlanta, GA 30333, USA
XX
RN [3]
RC Sequence update by submitter
RP 1-5366
RA Sanchez A.J., Vincent M.J., Deyde V.M., Khristova M.L., Nichol S.T.;
RT ;
RL Submitted (19-SEP-2005) to the EMBL/GenBank/DDBJ databases.
RL Special Pathogens Branch, DVRD, NCID, Centers for Disease Control and
RL Prevention, 1600 Clifton Road, Atlanta, GA 30333, USA
XX
CC On Sep 19, 2005 this sequence version replaced gi:21326944.
XX
FH Key Location/Qualifiers
FH
FT source 1. .5366
FT /country="Nigeria:Sokoto"
FT /db_xref="taxon:11593"
FT /mol_type="genomic RNA"
FT /note="from YARU, New Haven, Conn. SMB passed 13 time in
FT suckling mouse brain followed by 2 passes in CDC Vero E6
FT cells"
FT /organism="Crimean-Congo hemorrhagic fever virus"
FT /strain="IbAr10200"
FT /specific_host="Hyalomma excavatum"
FT /segment="M"
FT primer_bind 1. .18
FT CDS 93. .5147
FT /codon_start=1
FT /db_xref="InterPro:IPR001865"
FT /db_xref="InterPro:IPR007087"
FT /db_xref="UniProtKB/TrEMBL:Q8JSZ3"
FT /product="glycoprotein precursor"
FT /protein_id="AAM48106.1"
FT /translation="MHISLMYAILCLQLCGLGETHGSHNETRHNKTDTMTTPGDNPSSE
FT PPVSTALSITLDPSTVTPTTPASGLEGSGEVYTSPPITTGSLPLSETTPELPVTTGTDT
FT LSAGDVDPSTQTAGGTSAPTVRTSLPNSPSTPSTPQDTHHPVRNLLSVTSPGPDETSTP
FT SGTGKESSATSSPHPVSNRPPTPPATAQGPTENDSHNATEHPESLTQSATPGLMTSPTQ
FT IVHPQSATPITVQDTHPSPTNRSKRNLKMEIILTLSQGLKKYYGKILRLLQLTLEEDTE
FT GLLEWCKRNLGLDCDDTFFQKRIEEFFITGEGHFNEVLQFRTPGTLSTTESTPAGLPTA
FT EPFKSYFAKGFLSIDSGYYSAKCYSGTSNSGLQLINITRHSTRIVDTPGPKITNLKTIN
FT CINLKASIFKEHREVEINVLLPQVAVNLSNCHVVIKSHVCDYSLDIDGAVRLPHIYHEG
FT VFIPGTYKIVIDKKNKLNDRCTLFTDCVIKGREVRKGQSVLRQYKTEIRIGKASTGSRR
FT LLSEEPSDDCISRTQLLRTETAEIHGDNYGGPGDKITICNGSTIVDQRLGSELGCYTIN
FT RVRSFKLCENSATGKNCEIDSVPVKCRQGYCLRITQEGRGHVKLSRGSEVVLDACDTSC
FT EIMIPKGTGDILVDCSGGQQHFLKDNLIDLGCPKIPLLGKMAIYICRMSNHPKTTMAFL
FT FWFSFGYVITCILCKAIFYLLIIVGTLGKRLKQYRELKPQTCTICETTPVNAIDAEMHD
FT LNCSYNICPYCASRLTSDGLARHVIQCPKRKEKVEETELYLNLERIPWVVRKLLQVSES
FT TGVALKRSSWLIVLLVLFTVSLSPVQSAPIGQGKTIEAYRAREGYTSICLFVLGSILFI
FT VSCLMKGLVDSVGNSFFPGLSICKTCSISSINGFEIESHKCYCSLFCCPYCRHCSTDKE
FT IHKLHLSICKKRKKGSNVMLAVCKLMCFRATMEVSNRALFIRSIINTTFVLCILILAVC
FT VVSTSAVEMENLPAGTWEREEDLTNFCHQECQVTETECLCPYEALVLRKPLFLDSTAKG
FT MKNLLNSTSLETSLSIEAPWGAINVQSTYKPTVSTANIALSWSSVEHRGNKILVSGRSE
FT SIMKLEERTGISWDLGVEDASESKLLTVSVMDLSQMYSPVFEYLSGDRQVGEWPKATCT
FT GDCPERCGCTSSTCLHKEWPHSRNWRCNPTWCWGVGTGCTCCGLDVKDLFTDYMFVKWK
FT VEYIKTEAIVCVELTSQERQCSLIEAGTRFNLGPVTITLSEPRNIQQKLPPEIITLHPR
FT IEEGFFDLMHVQKVLSASTVCKLQSCTHGVPGDLQVYHIGNLLKGDKVNGHLIHKIEPH
FT FNTSWMSWDGCDLDYYCNMGDWPSCTYTGVTQHNHASFVNLLNIETDYTKNFHFHSKRV
FT TAHGDTPQLDLKARPTYGAGEITVLVEVADMELHTKKIEISGLKFASLACTGCYACSSG
FT ISCKVRIHVDEPDELTVHVKSDDPDVVAASSSLMARKLEFGTDSTFKAFSAMPKTSLCF
FT YIVEREHCKSCSEEDTKKCVNTKLEQPQSILIEHKGTIIGKQNSTCTAKASCWLESVKS
FT FFYGLKNMLSGIFGNVFMGIFLFLAPFILLILFFMFGWRILFCFKCCRRTRGLFKYRHL
FT KDDEETGYRRIIEKLNNKKGKNKLLDGERLADRRIAELFSTKTHIG"
FT primer_bind complement(5349. .5366)
XX
SQ Sequence 5366 BP; 1687 A; 1185 C; 1151 G; 1343 T; 0 other;
AF467768 Length: 5366 26-SEP-2005 Type: N Check: 3499 ..
1 tctcaaagaa atacttgcgg cacgtcagta cgtaagtgtt aactttgagg
51 aagtggattg agcatcttaa ttgcagcata cctgctaaca tcatgcatat
101 atcattaatg tatgcaatcc tttgcctaca gctgtgtggt ctgggagaga
151 ctcatggatc acacaatgaa actagacaca ataaaacaga caccatgaca
201 acacccggtg ataacccgag ctctgaaccg ccagtgagca cggccttgtc
251 tattacactt gacccctcca ctgtcacacc cacaacacca gccagtggat
301 tagaaggctc aggggaagtc tacacatccc ctccgatcac caccgggagc
351 ttgcccctgt cggagacaac accagaactc cctgttacaa ccggcacaga
401 caccttaagc gcaggtgatg tcgatcccag cacgcagaca gccggaggca
451 cctccgcacc aacagtccgc acaagtctac ccaacagccc tagcacacca
501 tctacaccac aagacacaca ccatcctgtg agaaatctac tttcagtcac
551 gagtcctggg ccagatgaaa catcaacacc ctcgggaaca ggcaaagaga
601 gctcagcaac cagtagccct catccagtct ccaacagacc accaacccct
651 cctgcaacag cccagggacc cactgaaaat gacagtcaca acgccactga
701 acaccctgag tccctgacac agtcagcaac cccaggccta atgacctctc
751 caacacagat agtccaccca caaagtgcca cccccataac cgttcaagac
801 acacatccca gtccaacgaa caggtctaaa agaaacctta agatggaaat
851 aatcttgact ttatctcagg gtttaaaaaa gtactatggg aaaatattaa
901 ggcttctgca actcacctta gaggaggaca ctgaaggtct actggaatgg
951 tgtaagagaa atcttggtct tgattgtgat gacactttct ttcaaaagag
1001 aattgaagaa ttctttataa ctggtgaggg ccattttaat gaagttttac
1051 aatttagaac gccaggcacg ttgagcacca cagagtcaac acctgctggg
1101 ctgccaacag ctgaaccttt taagtcctac ttcgccaaag gattcctctc
1151 gatagattca ggttactact cagccaaatg ttactcagga acatccaatt
1201 cagggcttca attgattaac attacccgac attcaactag aatagttgac
1251 acacctgggc ctaagatcac taacctaaag accatcaact gcataaactt
1301 gaaggcatcg atcttcaaag aacatagaga ggttgaaatc aatgtgcttc
1351 tcccccaagt tgcagttaat ctctcaaact gtcacgttgt aatcaaatca
1401 catgtctgtg actactcttt agacattgac ggtgcggtga ggcttcctca
1451 catttaccat gaaggagttt tcatcccagg aacttacaaa atagtgatag
1501 ataaaaaaaa taagttgaat gacagatgca ccttatttac cgactgtgtg
1551 ataaaaggaa gggaggttcg taaaggacag tcagttttga ggcagtacaa
1601 gacggaaatc aggattggca aggcatcaac cggctctaga agattgcttt
1651 cagaagaacc cagtgatgac tgtatatcaa gaactcaact attaaggaca
1701 gagactgcag agatccacgg cgacaactat ggtggcccgg gtgacaaaat
1751 aaccatctgc aatggctcaa ctattgtaga ccaaagactg ggcagtgaac
1801 taggatgcta caccatcaat agagtgaggt cattcaagct atgcgaaaac
1851 agtgccacag ggaagaattg tgaaatagac agtgtcccag ttaaatgcag
1901 gcagggttat tgcctaagaa tcactcagga agggaggggc cacgtaaaat
1951 tatctagggg ctcagaggtt gtcttagatg catgcgatac aagctgtgaa
2001 ataatgatac ctaagggcac tggtgacatc ctagttgact gttcaggtgg
2051 gcagcaacat tttctaaagg acaatttgat agatctagga tgccccaaaa
2101 ttccattatt gggcaaaatg gctatttaca tttgcagaat gtcaaaccac
2151 cccaaaacaa ccatggcttt cctcttctgg ttcagctttg gctatgtaat
2201 aacctgcata ctttgcaagg ccatttttta cttgttaata attgttggaa
2251 cactagggaa aaggctcaag cagtatagag agttgaaacc tcagacttgc
2301 accatatgtg agacaactcc tgtaaatgca atagatgctg agatgcatga
2351 cctcaattgc agttacaaca tttgtcccta ctgtgcatct agactaacct
2401 cagatgggct tgctaggcat gtgatacaat gccctaagcg gaaggagaaa
2451 gtggaagaaa ctgaactgta cttgaactta gaaagaattc cttgggttgt
2501 aagaaagctg ttgcaggtgt cagagtcaac tggtgtggca ttgaaaagaa
2551 gcagttggct gattgtgctg cttgtgctat tcactgtttc attatcacca
2601 gttcaatcag cacccattgg tcaagggaag acaattgagg cataccgggc
2651 cagggaaggg tacacaagta tatgcctctt tgtactagga agtatcctat
2701 ttatagtttc ttgcctaatg aaagggctgg ttgacagtgt tggcaactcc
2751 ttcttccctg gactgtccat ttgcaaaacg tgctccataa gcagcattaa
2801 tggctttgaa attgagtccc ataagtgcta ttgcagctta ttctgttgcc
2851 cctattgtag gcactgctct accgataaag aaattcataa gctgcacttg
2901 agcatctgca aaaaaaggaa aaaaggaagt aatgtcatgt tggctgtctg
2951 caagctcatg tgtttcaggg ccaccatgga agtaagtaac agagccctgt
3001 ttatccgtag catcatcaac accacttttg ttttgtgcat actgatacta
3051 gcagtttgtg ttgttagcac ctcagcagtg gagatggaaa acctaccagc
3101 agggacctgg gaaagagaag aagacctaac aaatttctgt catcaggaat
3151 gccaggttac agagactgaa tgcctctgcc cttatgaagc tctagtactc
3201 agaaagcctt tattcctaga tagtacagct aaaggcatga aaaatctgct
3251 aaattcaaca agtttagaaa cgagtttatc aattgaggca ccatggggag
3301 caataaatgt tcagtcaacc tacaaaccaa ctgtgtcaac tgcaaacata
3351 gcactcagtt ggagctcagt ggaacacaga ggcaataaga tcttggtttc
3401 aggcagatca gaatcaatta tgaagctgga agaaaggaca ggaatcagct
3451 gggatctcgg tgtagaagat gcctctgaat ctaaactgct tacagtatct
3501 gtcatggact tgtctcagat gtactctcct gtcttcgagt acttatcagg
3551 ggacagacag gtgggagagt ggcccaaagc aacttgcaca ggtgactgcc
3601 cagaaagatg tggctgcaca tcatcaacct gtttgcacaa agaatggcct
3651 cactcaagaa attggagatg caatcccact tggtgctggg gtgtagggac
3701 tggctgcacc tgttgtggat tagatgtgaa agaccttttt acagattata
3751 tgtttgtcaa gtggaaagtt gaatacatca agacagaggc catagtgtgt
3801 gtagaactta ctagtcagga aaggcagtgt agcttgattg aagcgggcac
3851 aaggttcaat ttaggtcctg tgaccatcac actgtcagaa ccaagaaaca
3901 tccaacaaaa actccctcct gaaataatca cactgcatcc taggatcgaa
3951 gaaggttttt ttgacctgat gcatgtgcaa aaggtgttat cggcaagcac
4001 agtgtgtaag ttgcagagtt gcacacatgg tgtgccagga gacctacagg
4051 tctaccacat cggaaattta ttaaaagggg ataaggtaaa tggacatcta
4101 attcataaaa ttgagccaca cttcaacacc tcctggatgt cctgggatgg
4151 ttgtgaccta gactactact gcaacatggg agattggcct tcttgcacat
4201 acacaggggt cacccaacac aatcatgctt catttgtaaa cttactcaac
4251 attgaaactg attacacaaa gaacttccac tttcactcta aaagggtcac
4301 tgcacacgga gatacaccac aactagatct taaggcaaga ccaacctatg
4351 gtgcaggcga gatcactgtt ctggtagaag ttgctgacat ggagttacat
4401 acaaagaaga ttgaaatatc aggcttaaaa tttgcaagct tagcttgcac
4451 aggttgttat gcttgtagct ctggcatctc atgcaaagtt agaattcatg
4501 tggatgaacc agatgaactt acagtacatg ttaaaagtga tgatccagat
4551 gtggttgcag ctagctcaag tctcatggca aggaagcttg aatttggaac
4601 agacagtaca tttaaagctt tctcggccat gcctaaaact tctctatgtt
4651 tctacattgt tgaaagagaa cactgtaaga gctgcagtga agaagacaca
4701 aaaaaatgtg ttaacacaaa acttgagcaa ccacaaagca ttttgatcga
4751 acacaaggga actataatcg gaaagcaaaa cagcacttgc acggctaagg
4801 caagttgctg gttagagtca gtcaagagtt ttttttatgg cctaaagaac
4851 atgcttagtg gcatttttgg caatgtcttt atgggcattt tcttgttcct
4901 tgcccccttc atcctgttaa tactattctt tatgtttggg tggaggatcc
4951 tattctgctt taaatgttgt agaagaacca gaggcctgtt caagtataga
5001 cacctcaaag acgatgaaga aactggttat agaaggatta ttgaaaaact
5051 aaacaataaa aaaggaaaaa acaaactgct tgatggtgaa agacttgctg
5101 atagaagaat tgccgaactg ttctctacaa aaacacacat tggctagacc
5151 aactgaatgg gccttaaaaa tgatggcatt acactgaaca atgctgtcat
5201 tcatgctgac atctttagtt gcaaccctac tacattatca tcacaatata
5251 ctacatctaa tctgctacat tgtatccatg tacagactct ataatgcttg
5301 aaactgcctt tgctctattt actctgacct aaatcttgac tgcgtgccgc
5351 cactatatct ttgaga