Sequence of DPV Cotton leaf crumple virus
Cotton leaf crumple virus - [Mexico : Sonora] segment A, complete sequence.
ACC No: AF480940
Dated: 2005-11-29 | Length: 2630 | CRC: 1387005134
ID AF480940 standard; genomic DNA; VRL; 2630 BP.
XX
AC AF480940;
XX
SV AF480940.1
XX
DT 03-MAR-2003 (Rel. 75, Created)
DT 29-NOV-2005 (Rel. 85, Last updated, Version 6)
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DE Cotton leaf crumple virus - [Mexico : Sonora] segment A, complete sequence.
XX
KW .
XX
OS Cotton leaf crumple virus - [Mexico : Sonora]
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
XX
RN [1]
RP 1-2630
RA Idris A.M., Brown J.K.;
RT "Cotton leaf crumple virus is a distinct Western Hemisphere begomovirus
RT species with complex evolutionary relationships indicative of recombination
RT and reassortment";
RL Phytopathology 94:1068-1074(2004).
XX
RN [2]
RP 1-2630
RA Brown J.K., Idris A.M.;
RT "Genetic Differentiation of Whitefly Bemisia tabaci Mitochondrial
RT Cytochrome Oxidase I, and Phylogeographic Concordance with the Coat Protein
RT of the Plant Virus Genus Begomovirus";
RL Ann. Entomol. Soc. Am. 98(6):827-837(2005).
XX
RN [3]
RP 1-2630
RA Idris A.M., Brown J.K.;
RT "Molecular characterization of cotton leaf crumple geminivirus";
RL Unpublished.
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RN [4]
RP 1-2630
RA Idris A.M., Brown J.K.;
RT ;
RL Submitted (05-FEB-2002) to the EMBL/GenBank/DDBJ databases.
RL Plant Sciences, University of Arizona, Tucson, AZ 85721, USA
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FH Key Location/Qualifiers
FH
FT source 1. .2630
FT /country="Mexico:Sonora"
FT /db_xref="taxon:335400"
FT /mol_type="genomic DNA"
FT /virion
FT /organism="Cotton leaf crumple virus - [Mexico : Sonora]"
FT /specific_host="cotton"
FT /segment="A"
FT CDS 195. .950
FT /codon_start=1
FT /db_xref="GOA:Q80A45"
FT /db_xref="InterPro:IPR000263"
FT /db_xref="InterPro:IPR000650"
FT /db_xref="UniProtKB/TrEMBL:Q80A45"
FT /product="coat protein AV1"
FT /protein_id="AAO49268.1"
FT /translation="MPKRDAPWRLLAGTSKVSRNANYSPLRVLGPKVNKASEWVYRPMY
FT RKPRIYRTLRTPDIPRGCEGPCKVQSYEQRHDVSHVGKVMCISDVTRGNGITHRVGKRF
FT CVKSVYILGKIWMDENIKLKNHTNSVIFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATV
FT KNDLRDRLQVMHKFYAKVTGGQYASNEQALVKRFWKVNNHVVYNHQEAGKYENHTENAL
FT LLYMACTHASNPVYATLKIRIYFYDSIMN"
FT CDS complement(947. .1345)
FT /codon_start=1
FT /db_xref="InterPro:IPR000657"
FT /db_xref="UniProtKB/TrEMBL:Q80A42"
FT /product="AC3"
FT /protein_id="AAO49271.1"
FT /translation="MDSRTGEIITARQAENGVYIWEIINPLYFKIYGVEDLLYTRTRIY
FT HVQIRFNHNLRRALHLHKAYLNFQVWTTSLTASGSTYLIRFKQLVMLYLDELGVISLNN
FT VIRAVRFATDKSYVSYVLENHSIKFKFY"
FT CDS complement(1092. .1481)
FT /codon_start=1
FT /db_xref="GOA:Q80A43"
FT /db_xref="InterPro:IPR000942"
FT /db_xref="UniProtKB/TrEMBL:Q80A43"
FT /product="AC2"
FT /protein_id="AAO49270.1"
FT /translation="MLSSSLSTPPSIKKAHRQAKRRAIRRRRIDLNCGCTIYFHIGCTG
FT HGFTHRGNHHCTSGREWRVYLGDNKSPIFQDIRSRGSAIHQDAYIPRPDPIQPQLTESV
FT ASPQSLPELPSLDDISDSFWVDLFN"
FT CDS complement(1408. .2472)
FT /codon_start=1
FT /db_xref="GOA:Q80A44"
FT /db_xref="HSSP:1L5I"
FT /db_xref="InterPro:IPR001191"
FT /db_xref="InterPro:IPR001301"
FT /db_xref="UniProtKB/TrEMBL:Q80A44"
FT /product="replication associated protein AC1"
FT /protein_id="AAO49269.1"
FT /translation="MPRNPDSFRLQARHIFLTYPKCDIPKNEALQMLQTLSWSVVKPTY
FT IRVAREEHSDGFPHLHCLIQLSGKSNIKNKRFFDLTHPRRSTNFHPNIQAAKDANAVKN
FT YITKDGDCCESGQFKVPGGTKKNKDDVYYNAINAPSLAEALAIIRAGDPRAFIVSYHNI
FT TANLERLFKKAPEQWVPPFPLSSFTNVPEQMQEWADDYFGMGPAARPVRPVSLIVEGDS
FT RTGKTMWARALGPHNYLSGHLDFNNRVYSNNVAYNVIDDVAPQYLKLKHWKELLGAQKD
FT WQSNCKYGKPVQIKGGIPSIVLCNPGEGSSYKDFLDKAENASLKHWTLKNVIFITLDAP
FT LYQEGTQASQEEGD"
XX
SQ Sequence 2630 BP; 689 A; 550 C; 622 G; 769 T; 0 other;
AF480940 Length: 2630 29-NOV-2005 Type: N Check: 1405 ..
1 actgatggcc gcgcggattt tggagccccc ttttgtcgtt agcgcgacct
51 ttaattcaaa ttaaaggttg cttttttcta tcgtccaatc attttgcgcc
101 tgactagcct agatattagc aacaacttcg cgactaagtt gttgaccgtc
151 aagtataaat taatgggctt atggcccaat gggtatagag caaaatgccc
201 aagcgtgatg ccccgtggcg cttattagcg ggtacgtcta aggtaagtcg
251 aaatgccaac tactctccct tgagagtatt gggccctaaa gttaataagg
301 cctctgaatg ggtttacagg cctatgtaca ggaagcccag aatctatcgc
351 acgttaagga cgcctgacat tccgagaggc tgtgaagggc catgtaaagt
401 ccagtcatat gaacagcgcc acgatgtctc acacgtgggt aaggtaatgt
451 gtatatctga tgtcacacgt ggtaatggta tcacccaccg tgttggtaag
501 cgtttctgtg ttaagtctgt atatatttta gggaaaatat ggatggatga
551 gaatattaag ctgaagaacc acacgaacag cgtcattttt tggctggtta
601 gagatcgtag accatatggc acgcctatgg actttggtca agtgtttaat
651 atgtttgaca acgagccaag tactgccact gtcaagaacg atctcagaga
701 taggttgcag gtcatgcaca agttttatgc taaggtaact ggaggacaat
751 acgcgagcaa cgagcaagcc ttggtcaaga gattctggaa ggtcaacaat
801 catgtggtgt acaaccacca agaagcaggg aaatatgaga atcacacgga
851 gaatgcgtta ttattgtaca tggcatgtac tcatgcctct aatcctgtgt
901 atgcaacgtt gaaaattcgg atctattttt acgattcgat catgaattaa
951 taaaatttaa attttattga atgattttct agtacataac tgacatacga
1001 cttatcagtt gcgaaacgaa cagctctaat tacattgtta agtgaaatta
1051 cgcctaattc gtctaagtac aacataacca actgtttaaa cctaattaaa
1101 taagtcgacc cagaagctgt cagagatgtc gtccagactt ggaagttcag
1151 gtaagctttg tggagatgca acgctctccg taagttgtgg ttgaatcgga
1201 tctggacgtg gtatatacgc gtcctggtgt atagcagatc ctctactccg
1251 tatatcttga aatatagggg atttattatc tcccagatat acacgccatt
1301 ctctgcctga cgtgcagtga tgatttcccc tgtgcgtgaa tccatgaccg
1351 gtgcagccta tgtggaagta tatggtgcac ccacagttta gatcaatgcg
1401 tcgtcgtcta atcgccctcc tcttggcttg cctgtgtgcc ttcttgatag
1451 aggggggcgt cgagagtgat gaagataaca ttcttgagag tccaatgttt
1501 gagcgacgca ttttccgctt tatccaggaa atctttatag ctggatccct
1551 cgcctggatt gcaaagcacg attgaaggga tccctccttt aatttgaact
1601 ggtttcccgt acttgcaatt tgactgccag tctttttggg ccccaagaag
1651 ctctttccaa tgctttagct ttaggtattg cggtgctacg tcatcaatga
1701 cgttataggc aacattattc gagtacactc gattattgaa gtccaggtgt
1751 ccactgaggt aattatgtgg gcctaaagca cgagcccaca tcgtcttgcc
1801 cgttctagaa tcaccttcca ctatgagact aactggtctt acaggccgcg
1851 cagcgggacc cattccaaaa taatcatccg cccattcttg catctgttca
1901 ggaacgttag tgaaagagga aagtggaaat ggagggaccc attgttcagg
1951 cgcctttttg aaaaggcgtt ccaagttcgc tgtaatgtta tggtaactca
2001 cgatgaacgc ccttggatct ccggcccgga taattgcaag agcttccgcc
2051 aaactaggtg cattgatggc gttataatag acgtcgtctt tattcttctt
2101 tgtaccccca ggcactttga actgtccgga ttcacaacaa tcgccgtctt
2151 tggtgatgta attcttgacg gcgttggcgt ctttggctgc ttgtatgttt
2201 gggtgaaaat tggtcgacct tctggggtga gtaaggtcga aaaatctctt
2251 attcttgatg ttggactttc cagagagttg gatgagacag tgaaggtgtg
2301 ggaatccgtc cgagtgctcc tctctggcaa ctcgaatata tgttggtttg
2351 acgactgacc atgataaggt ttgaagcatt tgaagagctt cattttttgg
2401 gatatcgcac ttgggatagg ttaagaaaat atgtctggct tgtaaacgaa
2451 aagaatcggg gtttctaggc attttttaaa tagtgaccca ggactcaaaa
2501 actagctctc aacttctctc atatgttgtg gagtctggag tcctttatat
2551 atgtttacgc tatagaaggc atttggggac tctcccgggc ccaccatagg
2601 actccatacc gcggccatct atataatatt