Sequence of DPV Alpinia mosaic virus

Alpinia mosaic virus polyprotein gene, partial cds.

ACC No: AF499025

Dated: 2003-05-23 | Length: 1731 | CRC: -482219098

                !!NA_SEQUENCE 1.0
ID   AF499025   standard; RNA; VRL; 1731 BP.
XX
AC   AF499025;
XX
SV   AF499025.1
XX
DT   02-MAY-2003 (Rel. 75, Created)
DT   23-MAY-2003 (Rel. 75, Last updated, Version 2)
XX
DE   Alpinia mosaic virus polyprotein gene, partial cds.
XX
KW   .
XX
OS   Alpinia mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1731
RX   MEDLINE; 22640573.
RX   PUBMED; 12756625.
RA   Liou R.F., Yan H.Z., Hong J.L.;
RT   "Molecular evidence that aphid-transmitted Alpinia mosaic virus is a
RT   tentative member of the genus Macluravirus";
RL   Arch. Virol. 148(6):1211-1218(2003).
XX
RN   [2]
RP   1-1731
RA   Hung C.-L., Liou R.-F.;
RT   "The 3'-terminal sequence of the Alpinia mosaic virus genomic RNA";
RL   Unpublished.
XX
RN   [3]
RP   1-1731
RA   Hung C.-L., Liou R.-F.;
RT   ;
RL   Submitted (04-APR-2002) to the EMBL/GenBank/DDBJ databases.
RL   Plant Pathology, National Taiwan University, 1 Sec. 4, Roosevelt Road,
RL   Taipei 106, Taiwan
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1731
FT                   /db_xref="taxon:204073"
FT                   /mol_type="genomic RNA"
FT                   /organism="Alpinia mosaic virus"
FT   CDS             <1. .1545
FT                   /codon_start=1
FT                   /note="contains NIb and coat protein"
FT                   /product="polyprotein"
FT                   /protein_id="AAP30734.1"
FT                   /translation="GNNSGQPSTVVDNTIILMMSFFYAYIHKTGDLLCESINENFKFVC
FT                   NGDDNKFSISPSFFEKHGSQFSSEIEQLGLNYVFDTITDDITENPYMSLTMVRTVSGIG
FT                   FTLHPTRIIAIVQWIKKGNLVQATQAAFAAMVESYNDPWLFGILHLYLVWLIIEHKDEL
FT                   DFARDNDFVNLVYMDPCQVHALHYGIDTDVMCYEDDDELCEGISCTQPTQHFQMDLAQT
FT                   GTRSGTQQGVVGGTPPNNQQIVPSAITPVNDDVDRGKQIVASDESEQPEASQESNNTES
FT                   EVDWKIPPIPKTLSHFHNPKVKGKKLWNSRIAKNIDPEQFELTTQMATTLQFERWVERV
FT                   RKNLGSPNETNFQIYLTSWCLWCANNGTSSELDANQMMEIHASGQYASIPISIFVDPAI
FT                   EFGGLRKIMRHLSDITTKILEQGGKMTAWGKKRGFTQLAMIPYAFDFCVQTLKMPKTVR
FT                   EQLNQSKAAAIGSGNRRVMLLDGKIQRSKTSYERHIDTDVDEYEHGQAIEPRATLH"
XX
SQ   Sequence 1731 BP; 550 A; 306 C; 396 G; 474 T; 5 other;

  AF499025  Length: 1731  May 28, 2003 14:38  Type: N  Check: 8535  ..

       1  gggaataata gtgggcaacc aagcacagtt gtggacaaca ctatcattct
      51  gatgatgtca ttcttttacg catacattca taaaacaggg gatcttcttt
     101  gcgagtcaat taatgagaat ttcaagtttg tttgcaatgg tgatgataat
     151  aaattttcaa tatcaccatc tttctttgag aaacatggct cacaattttc
     201  gagcgagata gaacagcttg ggctaaatta cgttttcgac acaatcactg
     251  atgatatcac tgaaaatccg tacatgagct taacgatggt gagaactgtt
     301  agtggcatcg gattcacatt gcaccccaca agaataattg caatagttca
     351  atggattaag aaagggaatt tggttcaagc cacacaggca gcatttgccg
     401  cgatggttga gtcatacaat gatccatggc tctttggcat tcttcatctt
     451  tacctcgtct ggttaattat cgaacacaaa gatgagttgg attttgcacg
     501  ggataatgat tttgttaatc ttgtttatat ggatccctgc caagttcatg
     551  ctcttcacta tggaattgat acagacgtga tgtgttatga agatgatgat
     601  gagctatgcg aggggatttc atgcacgcag ccgacacaac attttcaaat
     651  ggatttggct caaacaggaa ctaggagtgg gacacaacag ggtgtagttg
     701  gaggaacacc accaaacaat cagcaaatcg tgcctagtgc gataacacct
     751  gttaatgatg atgtggacag agggaaacaa attgtcgcaa gtgatgaaag
     801  tgaacagcca gaagcgtcac aagaatcaaa caacacagag agtgaagttg
     851  attggaaaat tccgccaatt cctaaaactt tgtcacactt ccataatccg
     901  aaagtaaagg gcaagaagtt gtggaactca cgaattgcaa agaatataga
     951  tcctgaacag tttgagttaa caacacaaat ggcgacaacg cttcaatttg
    1001  agagatgggt tgagagggtt aggaaaaatt taggctcacc aaatgaaaca
    1051  aattttcaaa tttatttaac atcttggtgt ttgtggtgtg caaacaatgg
    1101  gacatcgtct gaactggatg ctaatcagat gatggagatt catgcttcag
    1151  gtcaatatgc atcaattccc atttcaatat ttgtcgaccc agccattgag
    1201  ttcgggggtt tgaggaagat catgagacat ttgagtgata tcacaacaaa
    1251  aattttggag cagggtggaa aaatgaccgc atggggcaaa aagcggggat
    1301  ttacacaact ggccatgatt ccctacgcat ttgatttctg cgtgcaaacg
    1351  ttgaagatgc ccaaaactgt gagggagcag ttaaatcaaa gcaaagctgc
    1401  agctatcgga tctggtaacc gaagggttat gttgttggat ggcaaaatac
    1451  agagaagcaa aacgagttac gaaaggcaca ttgataccga tgttgatgaa
    1501  tatgaacatg ggcaggctat tgagccgcgt gcaacgctac attaaacatt
    1551  agatgtttta tgttattgta gtgtgtttta gtaattccta tttacataaa
    1601  ctagatggat ataggttaaa tgggagtttt tgtgggtttt ctctcaatgc
    1651  ctagcaaccc tcaccatcaa ctaaanctga cctggatggt cgnttggtgt
    1701  ttaaggnacg cccatnaaaa aactggtncc c