Sequence of DPV Papaya ringspot virus

Papaya ringspot virus isolate VNW-40 coat protein (cp) gene, partial cds.

ACC No: AF506851

Dated: 2002-09-24 | Length: 840 | CRC: -1917955086

                
ID   AF506851   standard; genomic RNA; VRL; 840 BP.
XX
AC   AF506851;
XX
SV   AF506851.1
XX
DT   24-SEP-2002 (Rel. 73, Created)
DT   24-SEP-2002 (Rel. 73, Last updated, Version 1)
XX
DE   Papaya ringspot virus isolate VNW-40 coat protein (cp) gene, partial cds.
XX
KW   .
XX
OS   Papaya ringspot virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-840
RX   PUBMED; 12237441.
RA   Bateson M.F., Lines R.E., Revill P., Chaleeprom W., Ha C.V., Gibbs A.J.,
RA   Dale J.L.;
RT   "On the evolution and molecular epidemiology of the potyvirus Papaya
RT   ringspot virus";
RL   J. Gen. Virol. 83(Pt 10):2575-2585(2002).
XX
RN   [2]
RP   1-840
RA   Bateson M.F., Lines R.E., Revill P., Chaleeprom W., Ha C.V., Gibbs A.J.,
RA   Dale J.L.;
RT   ;
RL   Submitted (29-APR-2002) to the EMBL/GenBank/DDBJ databases.
RL   School of Life Sciences, Queensland University of Technology, 2 George St,
RL   Brisbane, Queensland 4000, Australia
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .840
FT                   /country="Viet Nam"
FT                   /db_xref="taxon:12205"
FT                   /mol_type="genomic RNA"
FT                   /organism="Papaya ringspot virus"
FT                   /isolate="VNW-40"
FT                   /specific_host="pumpkin"
FT   CDS             <1. .840
FT                   /codon_start=1
FT                   /db_xref="GOA:Q8BD86"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="UniProtKB/TrEMBL:Q8BD86"
FT                   /gene="cp"
FT                   /product="coat protein"
FT                   /protein_id="AAN17198.1"
FT                   /translation="CLNEKLKEKEKQKEKEKEKQKDKDDDGASDGNNVSTSTKTGERDR
FT                   DVNAGTSGTFTVPRIKSFTDKMVLPRIKGKTVLNLNHLLQYNPQQIDISNTRATQSQFE
FT                   KWYEGVRNDYGLNDNEMQVMLNGLMVWCIENGTSPDISGVWVMMDGETQVDYPIKPLIE
FT                   HATPSFRQIMAHFSNAAEAYIAMRNATERYMPRYGIKRNLTDISLARYAFDFYEVNSKT
FT                   PDRAREAHMQMKAAALRNTSRRMFGMDGSVSNKEENTERHTVEDVNRDMHSLLGMRN"
XX
SQ   Sequence 840 BP; 298 A; 140 C; 199 G; 203 T; 0 other;

af506851 Length: 840  24-SEP-2002  Type: N  Check: 6019  ..

       1  tgtttgaatg agaagctcaa agagaaagaa aaacaaaaag aaaaagaaaa
      51  agagaaacaa aaagataaag atgatgatgg agctagtgac ggaaataatg
     101  tgtcaactag cacgaaaact ggagagagag atagagatgt caatgctgga
     151  actagtggaa ctttcactgt tccgaggata aagtcattta ctgataagat
     201  ggttttacca agaattaaag gaaaaactgt ccttaactta aatcatcttc
     251  ttcagtacaa tccgcaacaa attgacatct caaacactcg tgccactcaa
     301  tctcaatttg aaaagtggta tgagggagtg aggaatgatt atggccttaa
     351  tgacaatgaa atgcaagtga tgttaaatgg tttgatggtt tggtgtatcg
     401  aaaatggtac atctccagac atatctggtg tctgggtaat gatggatggg
     451  gaaacccaag tcgattatcc cattaaacct ttgattgaac acgcaactcc
     501  ttcatttagg cagatcatgg ctcacttcag caacgcggca gaggcataca
     551  tcgcaatgag aaatgcaact gagaggtaca tgccgcggta tggaattaaa
     601  aggaatttga ctgacattag tctcgctaga tatgctttcg atttttatga
     651  ggtgaattca aaaacacctg atagggctcg tgaagctcac atgcagatga
     701  aggctgcagc gctacgtaat actagtcgca gaatgtttgg aatggacggc
     751  agtgttagta acaaggaaga aaacacggag agacacacag tggaagatgt
     801  caacagagac atgcactctc tcctgggtat gcgcaattaa