Sequence of DPV Papaya ringspot virus

Papaya ringspot virus isolate VNP-26 coat protein (cp) gene, partial cds.

ACC No: AF506865

Dated: 2002-09-24 | Length: 837 | CRC: -381894696

                
ID   AF506865   standard; genomic RNA; VRL; 837 BP.
XX
AC   AF506865;
XX
SV   AF506865.1
XX
DT   24-SEP-2002 (Rel. 73, Created)
DT   24-SEP-2002 (Rel. 73, Last updated, Version 1)
XX
DE   Papaya ringspot virus isolate VNP-26 coat protein (cp) gene, partial cds.
XX
KW   .
XX
OS   Papaya ringspot virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-837
RX   PUBMED; 12237441.
RA   Bateson M.F., Lines R.E., Revill P., Chaleeprom W., Ha C.V., Gibbs A.J.,
RA   Dale J.L.;
RT   "On the evolution and molecular epidemiology of the potyvirus Papaya
RT   ringspot virus";
RL   J. Gen. Virol. 83(Pt 10):2575-2585(2002).
XX
RN   [2]
RP   1-837
RA   Bateson M.F., Lines R.E., Revill P., Chaleeprom W., Ha C.V., Gibbs A.J.,
RA   Dale J.L.;
RT   ;
RL   Submitted (29-APR-2002) to the EMBL/GenBank/DDBJ databases.
RL   School of Life Sciences, Queensland University of Technology, 2 George St,
RL   Brisbane, Queensland 4000, Australia
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .837
FT                   /country="Viet Nam"
FT                   /db_xref="taxon:12205"
FT                   /mol_type="genomic RNA"
FT                   /note="biotype: P"
FT                   /organism="Papaya ringspot virus"
FT                   /isolate="VNP-26"
FT                   /specific_host="Carica papaya"
FT   CDS             <1. .837
FT                   /codon_start=1
FT                   /db_xref="GOA:Q8BD72"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="UniProtKB/TrEMBL:Q8BD72"
FT                   /gene="cp"
FT                   /product="coat protein"
FT                   /protein_id="AAN17212.1"
FT                   /translation="GLNEKLKEKEKQKEGKEKQKDKINDGASDGIDVSTSTKTGERDRD
FT                   VNAGTSGTFTVPRIKSFTDKMILPRIKGKTVLNLNHLLQYNPRQIDISNTRATQSQFEK
FT                   WYEGVRTDYSLNDNEMQVMLNGLMVWCIENGTSPDISGVWVMMDGETQVDYPIKPLIEH
FT                   ATPSFRQIMAHFSNAAEAYIAKRNATEKYMPRYGIKRNLTDISLARYAFDFYEVNSKTP
FT                   DRAREAHMQMKAAALRNTGRRMFGMDGSVSNKEENTERHTVEDVNRDMHSLLGMRN"
XX
SQ   Sequence 837 BP; 292 A; 138 C; 201 G; 206 T; 0 other;

af506865 Length: 837  24-SEP-2002  Type: N  Check: 5573  ..

       1  ggtttgaatg agaagctcaa agagaaagaa aaacagaaag aaggaaaaga
      51  aaaacaaaag gataaaatta atgatggtgc tagtgacgga atcgatgtgt
     101  caactagtac aaaaactgga gagagagata gagatgtcaa tgccggaact
     151  agtgggactt tcaccgttcc aaggataaaa tcgtttactg ataagatgat
     201  tttaccaaga attaagggaa aaactgtcct taatttaaat catcttcttc
     251  agtataatcc gagacaaatt gacatctcaa acactcgtgc cactcaatct
     301  caattcgaga agtggtatga gggagtgagg actgattata gtcttaatga
     351  taacgaaatg caagtgatgt taaatggttt gatggtttgg tgtatcgaaa
     401  atggtacatc tccagacata tctggtgttt gggtaatgat ggatggagaa
     451  acccaagttg attatcctat caagcctttg attgaacacg caactccttc
     501  atttagacaa attatggctc acttcagcaa cgcggcagaa gcatacatcg
     551  cgaagaggaa tgcaactgag aagtacatgc cgcggtatgg aattaagagg
     601  aatttgactg acattagtct cgctagatat gcttttgatt tctatgaggt
     651  gaattcaaaa acacctgata gagctcgtga agctcacatg cagatgaaag
     701  ctgcagcgct gcgtaatact ggtcgcagaa tgtttggaat ggacggcagt
     751  gtcagtaaca aggaagaaaa cacggagaga cacacagtgg aagatgtcaa
     801  cagagacatg cactctctcc tgggtatgcg caattga