Sequence of DPV Papaya ringspot virus

Papaya ringspot virus isolate VNP-25 coat protein (cp) gene, partial cds.

ACC No: AF506866

Dated: 2002-09-24 | Length: 837 | CRC: -83243279

                
ID   AF506866   standard; genomic RNA; VRL; 837 BP.
XX
AC   AF506866;
XX
SV   AF506866.1
XX
DT   24-SEP-2002 (Rel. 73, Created)
DT   24-SEP-2002 (Rel. 73, Last updated, Version 1)
XX
DE   Papaya ringspot virus isolate VNP-25 coat protein (cp) gene, partial cds.
XX
KW   .
XX
OS   Papaya ringspot virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-837
RX   PUBMED; 12237441.
RA   Bateson M.F., Lines R.E., Revill P., Chaleeprom W., Ha C.V., Gibbs A.J.,
RA   Dale J.L.;
RT   "On the evolution and molecular epidemiology of the potyvirus Papaya
RT   ringspot virus";
RL   J. Gen. Virol. 83(Pt 10):2575-2585(2002).
XX
RN   [2]
RP   1-837
RA   Bateson M.F., Lines R.E., Revill P., Chaleeprom W., Ha C.V., Gibbs A.J.,
RA   Dale J.L.;
RT   ;
RL   Submitted (29-APR-2002) to the EMBL/GenBank/DDBJ databases.
RL   School of Life Sciences, Queensland University of Technology, 2 George St,
RL   Brisbane, Queensland 4000, Australia
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .837
FT                   /country="Viet Nam"
FT                   /db_xref="taxon:12205"
FT                   /mol_type="genomic RNA"
FT                   /note="biotype: P"
FT                   /organism="Papaya ringspot virus"
FT                   /isolate="VNP-25"
FT                   /specific_host="Carica papaya"
FT   CDS             <1. .837
FT                   /codon_start=1
FT                   /db_xref="GOA:Q8BD71"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="UniProtKB/TrEMBL:Q8BD71"
FT                   /gene="cp"
FT                   /product="coat protein"
FT                   /protein_id="AAN17213.1"
FT                   /translation="GLNEKLKENEKQKEGKDKQKNKTNDGASDGNDVSTSTKTGERDRD
FT                   VNAGTSGTFTVPRIKSFTDKMNLPKIKGKTVLNLNHLLQYNPQQIDISNTRATQSQFER
FT                   WYEGVRNDYGLNDSEMQVMLNGLMVWCIENGTSPDISGVWVMMDGEVQVDYPIKPLIEH
FT                   ATPSFRQIMAHFSNAAEVYIAKRNATERYMPRYGIKRNLTDISLARYAFDFYEVNSKTP
FT                   DRAREAHMQMKAAALRNASRRLFGMDGSVSNKEENTERHTVEDVNRDMHSLLGMRN"
XX
SQ   Sequence 837 BP; 292 A; 144 C; 200 G; 201 T; 0 other;

af506866 Length: 837  24-SEP-2002  Type: N  Check: 3641  ..

       1  ggtctgaatg agaagctcaa agaaaatgaa aagcagaaag aaggaaaaga
      51  taaacaaaaa aataaaacca atgatggagc tagtgacgga aacgatgtgt
     101  caactagcac aaaaactgga gagagagata gagatgtcaa tgccggaact
     151  agtggaactt tcactgtccc aaggataaag tcatttactg ataagatgaa
     201  tttacccaaa attaaaggaa aaactgtcct taatttaaat catcttcttc
     251  agtataatcc gcaacaaatt gacatctcaa acactcgtgc cactcaatct
     301  caattcgaaa ggtggtatga gggagtgagg aatgattatg gtcttaatga
     351  tagcgaaatg caagtgatgt taaatggttt gatggtttgg tgtatcgaaa
     401  atggtacatc tccggatata tctggtgtct gggtaatgat ggatggggaa
     451  gtccaagttg attaccccat caaacctttg attgaacacg caactccttc
     501  attcaggcaa atcatggctc acttcagtaa cgcggcagag gtatacattg
     551  caaagaggaa tgcaactgag aggtatatgc cgcggtatgg aatcaagagg
     601  aatttgactg acattagtct cgctagatat gctttcgatt tctatgaggt
     651  aaattcaaaa acacctgata gggctcgtga agctcatatg cagatgaagg
     701  ctgcagcgtt acgcaatgct agtcgcagac tatttggaat ggacggcagt
     751  gtcagtaaca aggaagaaaa cacggagaga cacacagtgg aagatgtcaa
     801  cagagacatg cactctctcc tgggtatgcg caattga