Sequence of DPV Papaya ringspot virus

Papaya ringspot virus isolate VNP-24 coat protein (cp) gene, partial cds.

ACC No: AF506867

Dated: 2002-09-24 | Length: 837 | CRC: -1314904638

                
ID   AF506867   standard; genomic RNA; VRL; 837 BP.
XX
AC   AF506867;
XX
SV   AF506867.1
XX
DT   24-SEP-2002 (Rel. 73, Created)
DT   24-SEP-2002 (Rel. 73, Last updated, Version 1)
XX
DE   Papaya ringspot virus isolate VNP-24 coat protein (cp) gene, partial cds.
XX
KW   .
XX
OS   Papaya ringspot virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-837
RX   PUBMED; 12237441.
RA   Bateson M.F., Lines R.E., Revill P., Chaleeprom W., Ha C.V., Gibbs A.J.,
RA   Dale J.L.;
RT   "On the evolution and molecular epidemiology of the potyvirus Papaya
RT   ringspot virus";
RL   J. Gen. Virol. 83(Pt 10):2575-2585(2002).
XX
RN   [2]
RP   1-837
RA   Bateson M.F., Lines R.E., Revill P., Chaleeprom W., Ha C.V., Gibbs A.J.,
RA   Dale J.L.;
RT   ;
RL   Submitted (29-APR-2002) to the EMBL/GenBank/DDBJ databases.
RL   School of Life Sciences, Queensland University of Technology, 2 George St,
RL   Brisbane, Queensland 4000, Australia
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .837
FT                   /country="Viet Nam"
FT                   /db_xref="taxon:12205"
FT                   /mol_type="genomic RNA"
FT                   /note="biotype: P"
FT                   /organism="Papaya ringspot virus"
FT                   /isolate="VNP-24"
FT                   /specific_host="Carica papaya"
FT   CDS             <1. .837
FT                   /codon_start=1
FT                   /db_xref="GOA:Q8BD70"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="UniProtKB/TrEMBL:Q8BD70"
FT                   /gene="cp"
FT                   /product="coat protein"
FT                   /protein_id="AAN17214.1"
FT                   /translation="GLNEKLKEKEKQKEEKDKQKDKTNDRASDGNDVSTSTKTGERDRD
FT                   VNAGTSGTFTVPRIKSFTDKMVLPRIKGKTVLNLNHLLQYNPQQIDISNTRATQSQFER
FT                   WYEGVRNDYGLNDSEMQVMLNGLMVWCIENGTSPDISGVWVMMDGEAQVDYPIKPLIEH
FT                   ATPSFRQIMAHFSNAAEAYIAKRNATERYMPRYGIKRNLTDISLARYAFDFYEVNSKTP
FT                   DRAREAHMQMKAAALRNASRRMFGMDGSVSNKEENTERHTVEDVNRDMHSLLGMRN"
XX
SQ   Sequence 837 BP; 292 A; 148 C; 202 G; 195 T; 0 other;

af506867 Length: 837  24-SEP-2002  Type: N  Check: 2330  ..

       1  ggtctgaatg agaagctcaa agaaaaagaa aagcagaaag aagaaaaaga
      51  taaacaaaaa gataaaacca atgatagagc tagtgacgga aacgatgtgt
     101  caactagcac aaaaactgga gagagagata gagatgtcaa tgccggaact
     151  agtggaactt ttactgttcc aaggataaag tcatttactg acaagatggt
     201  tctaccaaga attaaaggaa aaactgtcct taatttaaat catcttcttc
     251  agtataatcc gcaacaaatt gacatctcaa acactcgtgc cactcaatcc
     301  caattcgaaa ggtggtatga gggagtgagg aatgattatg gtcttaatga
     351  tagcgaaatg caagtgatgt taaatggttt gatggtttgg tgtatcgaaa
     401  atggtacatc tccggatata tctggtgtct gggtaatgat ggatggggaa
     451  gcccaagttg attaccccat caaacctttg attgaacacg caactccttc
     501  attcaggcaa atcatggctc acttcagtaa cgcggcagag gcatacattg
     551  caaagaggaa tgcaactgag aggtatatgc cgcggtatgg aatcaagaga
     601  aatttgactg acattagtct cgctagatac gctttcgact tctatgaggt
     651  gaattcaaaa acacctgata gggctcgtga agctcatatg cagatgaagg
     701  ctgcagcgct acgcaatgct agtcgcagaa tgtttggaat ggacggcagt
     751  gtcagtaaca aggaagaaaa cacggagaga cacacagtgg aagatgtcaa
     801  cagagacatg cactctctcc tgggtatgcg caattga