Sequence of DPV Papaya ringspot virus

Papaya ringspot virus isolate VNP-20 coat protein (cp) gene, partial cds.

ACC No: AF506871

Dated: 2002-09-24 | Length: 837 | CRC: -1113076752

                
ID   AF506871   standard; genomic RNA; VRL; 837 BP.
XX
AC   AF506871;
XX
SV   AF506871.1
XX
DT   24-SEP-2002 (Rel. 73, Created)
DT   24-SEP-2002 (Rel. 73, Last updated, Version 1)
XX
DE   Papaya ringspot virus isolate VNP-20 coat protein (cp) gene, partial cds.
XX
KW   .
XX
OS   Papaya ringspot virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-837
RX   PUBMED; 12237441.
RA   Bateson M.F., Lines R.E., Revill P., Chaleeprom W., Ha C.V., Gibbs A.J.,
RA   Dale J.L.;
RT   "On the evolution and molecular epidemiology of the potyvirus Papaya
RT   ringspot virus";
RL   J. Gen. Virol. 83(Pt 10):2575-2585(2002).
XX
RN   [2]
RP   1-837
RA   Bateson M.F., Lines R.E., Revill P., Chaleeprom W., Ha C.V., Gibbs A.J.,
RA   Dale J.L.;
RT   ;
RL   Submitted (29-APR-2002) to the EMBL/GenBank/DDBJ databases.
RL   School of Life Sciences, Queensland University of Technology, 2 George St,
RL   Brisbane, Queensland 4000, Australia
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .837
FT                   /country="Viet Nam"
FT                   /db_xref="taxon:12205"
FT                   /mol_type="genomic RNA"
FT                   /note="biotype: P"
FT                   /organism="Papaya ringspot virus"
FT                   /isolate="VNP-20"
FT                   /specific_host="Carica papaya"
FT   CDS             <1. .837
FT                   /codon_start=1
FT                   /db_xref="GOA:Q8BD66"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="UniProtKB/TrEMBL:Q8BD66"
FT                   /gene="cp"
FT                   /product="coat protein"
FT                   /protein_id="AAN17218.1"
FT                   /translation="GLNEKLKEKEKQKEEKGKQKDKNNEGASDGNDVSTSTKTGERDRD
FT                   VNAGTSGTFTVPRVKSFTDKMILPKIKGKTVLNLNHLLQYNPQQIDISNTRATQTQFEK
FT                   WYEGVRNDYGLNDNEMQVMLNGLMVWCIENGTSPDMSGVWVMMDGETQVDYPVKPLIEH
FT                   ATPSFRQIMAHFSNAAETYIAKRNATERYMPRYGIKRNLTDISLARYAFDFYEVNSKTP
FT                   DRAREAHMQMKAAALRNTGRRMFGMDGSVSNKEENTERHTVEDVNRDMHSLLGMRN"
XX
SQ   Sequence 837 BP; 293 A; 143 C; 206 G; 195 T; 0 other;

af506871 Length: 837  24-SEP-2002  Type: N  Check: 2968  ..

       1  gggttgaacg agaagctcaa agagaaagaa aaacaaaaag aagaaaaagg
      51  taaacaaaaa gacaagaata atgaaggtgc tagtgacgga aacgatgtgt
     101  caactagtac gaaaactgga gagagagata gagatgtcaa tgccgggact
     151  agtggaactt tcactgttcc gagagtgaag tcatttactg acaagatgat
     201  tttaccgaaa attaaaggaa aaactgtcct taatttaaat catcttcttc
     251  agtataatcc gcaacaaatt gatatctcaa acactcgtgc cactcaaact
     301  caattcgaaa agtggtatga gggagtgagg aatgattacg gtcttaacga
     351  taacgagatg caagtgatgt tgaatggttt gatggtttgg tgtatcgaaa
     401  atggtacatc tccagacatg tctggtgttt gggtaatgat ggatggggaa
     451  acacaagtcg attatcccgt caagccatta attgaacatg caactccctc
     501  gtttaggcaa atcatggctc atttcagtaa cgcggcagag acatacatcg
     551  cgaagaggaa tgcaactgaa aggtacatgc cgcggtatgg aatcaagagg
     601  aatttgactg atattagtct cgccagatat gctttcgatt tctatgaggt
     651  aaattcaaaa acacctgata gagctcgtga agctcatatg cagatgaaag
     701  ctgcagcact gcgtaatact ggtcgcagaa tgtttggaat ggacggcagt
     751  gtcagtaaca aggaagaaaa cacggagaga cacacagtgg aagatgtcaa
     801  cagagacatg cactctctcc tgggtatgcg caactga