Sequence of DPV Papaya ringspot virus

Papaya ringspot virus isolate VNP-18 coat protein (cp) gene, partial cds.

ACC No: AF506873

Dated: 2002-09-24 | Length: 837 | CRC: 140120789

                
ID   AF506873   standard; genomic RNA; VRL; 837 BP.
XX
AC   AF506873;
XX
SV   AF506873.1
XX
DT   24-SEP-2002 (Rel. 73, Created)
DT   24-SEP-2002 (Rel. 73, Last updated, Version 1)
XX
DE   Papaya ringspot virus isolate VNP-18 coat protein (cp) gene, partial cds.
XX
KW   .
XX
OS   Papaya ringspot virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-837
RX   PUBMED; 12237441.
RA   Bateson M.F., Lines R.E., Revill P., Chaleeprom W., Ha C.V., Gibbs A.J.,
RA   Dale J.L.;
RT   "On the evolution and molecular epidemiology of the potyvirus Papaya
RT   ringspot virus";
RL   J. Gen. Virol. 83(Pt 10):2575-2585(2002).
XX
RN   [2]
RP   1-837
RA   Bateson M.F., Lines R.E., Revill P., Chaleeprom W., Ha C.V., Gibbs A.J.,
RA   Dale J.L.;
RT   ;
RL   Submitted (29-APR-2002) to the EMBL/GenBank/DDBJ databases.
RL   School of Life Sciences, Queensland University of Technology, 2 George St,
RL   Brisbane, Queensland 4000, Australia
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .837
FT                   /country="Viet Nam"
FT                   /db_xref="taxon:12205"
FT                   /mol_type="genomic RNA"
FT                   /note="biotype: P"
FT                   /organism="Papaya ringspot virus"
FT                   /isolate="VNP-18"
FT                   /specific_host="Carica papaya"
FT   CDS             <1. .837
FT                   /codon_start=1
FT                   /db_xref="GOA:Q8BD64"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="UniProtKB/TrEMBL:Q8BD64"
FT                   /gene="cp"
FT                   /product="coat protein"
FT                   /protein_id="AAN17220.1"
FT                   /translation="GLNEKLKEKEKQKEEKGKQKDKNNEGASDGNDVSTSTKTGERDRD
FT                   VNAGTSGTFTVPRVKSFTDKMILPKIKGKTVLNLNHLLQYNPQQIDISNTRATQTQFEK
FT                   WYEGVRNDYGLNYDEMRMMLNGLMVWCIENGTSPDMSGVWVMMDGETQVDYPVKPLIEH
FT                   ATPSFRQIMAHFSNAAEAYIAKRNATERYMPRYGIKRNLTDISLARYAFDFYEVNSKTP
FT                   DRAREAHMQMKAAALRNTGRRMFGMDGSVSNKEENTERHTVEDVNRDMHSLLGMRN"
XX
SQ   Sequence 837 BP; 295 A; 142 C; 203 G; 197 T; 0 other;

af506873 Length: 837  24-SEP-2002  Type: N  Check: 2228  ..

       1  gggttgaatg agaagctcaa agagaaagaa aagcaaaaag aagaaaaagg
      51  taaacaaaaa gataagaata atgaaggtgc tagtgacgga aacgatgtgt
     101  caactagtac aaaaactgga gagagagata gagatgtcaa tgccggaact
     151  agtggaactt tcactgttcc gagagtaaag tcatttactg acaagatgat
     201  tttaccaaaa attaaaggaa aaactgtcct taatttgaat catcttcttc
     251  agtataatcc gcaacaaatt gatatctcaa acactcgtgc cactcaaact
     301  caattcgaaa agtggtatga gggagtgagg aatgattacg gtcttaacta
     351  tgacgaaatg cgaatgatgt taaatggttt gatggtttgg tgtatcgaaa
     401  atggtacatc tccagacatg tctggtgttt gggtaatgat ggatggggaa
     451  acacaagtcg attatcctgt caagccatta attgaacatg caactccctc
     501  gtttaggcaa atcatggctc acttcagtaa cgcggcagag gcatacatcg
     551  cgaagaggaa tgcaactgaa aggtacatgc cgcggtatgg aatcaagagg
     601  aatttgactg atattagtct cgccagatat gctttcgatt tctatgaggt
     651  aaattcaaaa acacctgata gagctcgtga agctcatatg cagatgaaag
     701  ctgcagcact gcgtaacact ggtcgcagaa tgtttggaat ggacggcagt
     751  gtcagtaaca aggaagaaaa cacggagaga cacacagtgg aagatgtcaa
     801  cagagacatg cactctctcc tgggtatgcg caactga