Sequence of DPV Papaya ringspot virus

Papaya ringspot virus isolate VNP-17 coat protein (cp) gene, partial cds.

ACC No: AF506874

Dated: 2002-09-24 | Length: 831 | CRC: -1254046349

                
ID   AF506874   standard; genomic RNA; VRL; 831 BP.
XX
AC   AF506874;
XX
SV   AF506874.1
XX
DT   24-SEP-2002 (Rel. 73, Created)
DT   24-SEP-2002 (Rel. 73, Last updated, Version 1)
XX
DE   Papaya ringspot virus isolate VNP-17 coat protein (cp) gene, partial cds.
XX
KW   .
XX
OS   Papaya ringspot virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-831
RX   PUBMED; 12237441.
RA   Bateson M.F., Lines R.E., Revill P., Chaleeprom W., Ha C.V., Gibbs A.J.,
RA   Dale J.L.;
RT   "On the evolution and molecular epidemiology of the potyvirus Papaya
RT   ringspot virus";
RL   J. Gen. Virol. 83(Pt 10):2575-2585(2002).
XX
RN   [2]
RP   1-831
RA   Bateson M.F., Lines R.E., Revill P., Chaleeprom W., Ha C.V., Gibbs A.J.,
RA   Dale J.L.;
RT   ;
RL   Submitted (29-APR-2002) to the EMBL/GenBank/DDBJ databases.
RL   School of Life Sciences, Queensland University of Technology, 2 George St,
RL   Brisbane, Queensland 4000, Australia
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .831
FT                   /country="Viet Nam"
FT                   /db_xref="taxon:12205"
FT                   /mol_type="genomic RNA"
FT                   /note="biotype: P"
FT                   /organism="Papaya ringspot virus"
FT                   /isolate="VNP-17"
FT                   /specific_host="Carica papaya"
FT   CDS             <1. .831
FT                   /codon_start=1
FT                   /db_xref="GOA:Q8BD63"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="UniProtKB/TrEMBL:Q8BD63"
FT                   /gene="cp"
FT                   /product="coat protein"
FT                   /protein_id="AAN17221.1"
FT                   /translation="GLNEKLKEKQKEEKGKQKDKNNEGASDGNDVSTSTRTGERDRDVN
FT                   AGTSGTFTVPRIKSFTDKMILPKIKGKTVLNLNHLLQYNPQQIDISNTRATQTQFEKWY
FT                   EGVRNDYGLNDNEMQVMLNGLMVWCIENGTSPDMSGVWVMMDGETQVDYPVKPLIEHAT
FT                   PSFRQIMAHFSNAAEAYIAKRNATERYMPRYGIKRNLTDISLARYAFDFYEVNSKTPDR
FT                   AREAHMQMKAAALRNASRRMFGMDGSVSNKEENTERHTVEDVNRDMHSLLGMRN"
XX
SQ   Sequence 831 BP; 294 A; 141 C; 199 G; 197 T; 0 other;

af506874 Length: 831  24-SEP-2002  Type: N  Check: 8922  ..

       1  gggttgaatg agaagctcaa agaaaaacaa aaagaagaaa aaggtaaaca
      51  aaaagataag aataatgaag gtgctagtga cggaaacgat gtgtcaacta
     101  gtacaagaac tggagagaga gatagagatg tcaatgccgg aactagtgga
     151  actttcactg ttccgaggat aaagtcattt actgacaaga tgattttacc
     201  aaaaattaaa ggaaaaactg tccttaattt aaatcatctt cttcagtata
     251  atccgcaaca aattgatatc tcaaacactc gtgccactca aactcaattc
     301  gaaaagtggt atgagggagt gaggaatgat tatggcctta acgataacga
     351  aatgcaagtg atgttaaatg gtttgatggt ttggtgtatc gaaaatggta
     401  catctccaga catgtctggt gtttgggtaa tgatggatgg ggaaacacaa
     451  gtcgattatc ccgtcaagcc attaattgaa catgcaactc cctcgtttag
     501  gcaaatcatg gctcatttca gtaacgcggc agaggcatac atcgcgaaga
     551  ggaatgcaac tgaaaggtac atgccgcggt atggaatcaa gaggaatttg
     601  actgatatta gtctcgccag atatgctttc gatttctatg aggtaaattc
     651  aaaaacacct gatagagctc gtgaagctca tatgcagatg aaagctgcag
     701  cactgcgtaa tgctagtcgc agaatgtttg gaatggacgg cagtgtcagt
     751  aacaaggaag aaaacacgga gagacacaca gtggaagatg tcaacagaga
     801  catgcactct ctcctgggta tgcgcaacta a