Sequence of DPV Papaya ringspot virus

Papaya ringspot virus isolate VNP-16 coat protein (cp) gene, partial cds.

ACC No: AF506875

Dated: 2002-09-24 | Length: 846 | CRC: 1065422386

                
ID   AF506875   standard; genomic RNA; VRL; 846 BP.
XX
AC   AF506875;
XX
SV   AF506875.1
XX
DT   24-SEP-2002 (Rel. 73, Created)
DT   24-SEP-2002 (Rel. 73, Last updated, Version 1)
XX
DE   Papaya ringspot virus isolate VNP-16 coat protein (cp) gene, partial cds.
XX
KW   .
XX
OS   Papaya ringspot virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-846
RX   PUBMED; 12237441.
RA   Bateson M.F., Lines R.E., Revill P., Chaleeprom W., Ha C.V., Gibbs A.J.,
RA   Dale J.L.;
RT   "On the evolution and molecular epidemiology of the potyvirus Papaya
RT   ringspot virus";
RL   J. Gen. Virol. 83(Pt 10):2575-2585(2002).
XX
RN   [2]
RP   1-846
RA   Bateson M.F., Lines R.E., Revill P., Chaleeprom W., Ha C.V., Gibbs A.J.,
RA   Dale J.L.;
RT   ;
RL   Submitted (29-APR-2002) to the EMBL/GenBank/DDBJ databases.
RL   School of Life Sciences, Queensland University of Technology, 2 George St,
RL   Brisbane, Queensland 4000, Australia
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .846
FT                   /country="Viet Nam"
FT                   /db_xref="taxon:12205"
FT                   /mol_type="genomic RNA"
FT                   /note="biotype: P"
FT                   /organism="Papaya ringspot virus"
FT                   /isolate="VNP-16"
FT                   /specific_host="Carica papaya"
FT   CDS             <1. .846
FT                   /codon_start=1
FT                   /db_xref="GOA:Q8BD62"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="UniProtKB/TrEMBL:Q8BD62"
FT                   /gene="cp"
FT                   /product="coat protein"
FT                   /protein_id="AAN17222.1"
FT                   /translation="GLNEKLKEKEKQKEKEKEKDKQKDKDNDGASDGNDVSTSTRTGER
FT                   DRDVNAGTSGTFTVPRIKSFTDKMILPRIKGKSVLNLNHLLQYNPQQIDISNTRATQSQ
FT                   FEKWYEGVKIDYGLNDNEMQVMLNGLMVWCIENGTSPDISGVWVMMDGETQVDYPIKPL
FT                   IEHATPSFRQIMAHFSNAAEAYIAKRNATERYMPRYGIKRNLTDISLARYAFDFYEVNS
FT                   KTPDRAREAHMQMKAAALRNASRRMFGMDGSVSNKEENTERHTVEDVNRDMHSLLGMRN
FT                   "
XX
SQ   Sequence 846 BP; 298 A; 140 C; 201 G; 207 T; 0 other;

af506875 Length: 846  24-SEP-2002  Type: N  Check: 6875  ..

       1  ggtcttaatg aaaagctcaa agaaaaggaa aaacagaaag agaaagaaaa
      51  agaaaaagat aaacaaaaag ataaagataa tgatggagct agtgacggaa
     101  atgatgtgtc aactagcaca aggactggag agagagatag agatgtcaac
     151  gccggaacta gcggaacttt cactgttcca aggataaaat cttttactga
     201  taagatgatt ttaccaagaa ttaaggggaa gtctgtcctt aatttaaatc
     251  atcttcttca gtataatccg caacaaattg acatctcaaa cactcgtgcc
     301  actcaatccc aatttgaaaa gtggtatgag ggagtgaaga ttgattatgg
     351  tcttaatgat aatgaaatgc aagtgatgtt aaatggtttg atggtttggt
     401  gtatcgaaaa tggtacatct ccagacatat ctggtgtctg ggtaatgatg
     451  gatggggaaa cccaggttga ttatcccatc aaacctttaa ttgaacatgc
     501  aactccttca ttcaggcaaa tcatggctca cttcagtaac gcggcagagg
     551  catatatcgc aaagagaaat gcaactgaga ggtacatgcc gcggtatgga
     601  attaaaagga atttgactga cattagtctt gctcgatatg cttttgattt
     651  ctatgaggtg aattcgaaaa cacctgatag ggctcgtgaa gctcatatgc
     701  agatgaaggc tgcagcgcta cgcaatgcta gtcgcagaat gttcggaatg
     751  gacggcagtg tcagtaacaa ggaagaaaat acggagagac acacagtgga
     801  agatgtcaac agagacatgc actctctcct gggtatgcgc aattaa