Sequence of DPV Papaya ringspot virus

Papaya ringspot virus isolate VNP-13 coat protein (cp) gene, partial cds.

ACC No: AF506878

Dated: 2002-09-24 | Length: 846 | CRC: -1524363415

                
ID   AF506878   standard; genomic RNA; VRL; 846 BP.
XX
AC   AF506878;
XX
SV   AF506878.1
XX
DT   24-SEP-2002 (Rel. 73, Created)
DT   24-SEP-2002 (Rel. 73, Last updated, Version 1)
XX
DE   Papaya ringspot virus isolate VNP-13 coat protein (cp) gene, partial cds.
XX
KW   .
XX
OS   Papaya ringspot virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-846
RX   PUBMED; 12237441.
RA   Bateson M.F., Lines R.E., Revill P., Chaleeprom W., Ha C.V., Gibbs A.J.,
RA   Dale J.L.;
RT   "On the evolution and molecular epidemiology of the potyvirus Papaya
RT   ringspot virus";
RL   J. Gen. Virol. 83(Pt 10):2575-2585(2002).
XX
RN   [2]
RP   1-846
RA   Bateson M.F., Lines R.E., Revill P., Chaleeprom W., Ha C.V., Gibbs A.J.,
RA   Dale J.L.;
RT   ;
RL   Submitted (29-APR-2002) to the EMBL/GenBank/DDBJ databases.
RL   School of Life Sciences, Queensland University of Technology, 2 George St,
RL   Brisbane, Queensland 4000, Australia
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .846
FT                   /country="Viet Nam"
FT                   /db_xref="taxon:12205"
FT                   /mol_type="genomic RNA"
FT                   /note="biotype: P"
FT                   /organism="Papaya ringspot virus"
FT                   /isolate="VNP-13"
FT                   /specific_host="Carica papaya"
FT   CDS             <1. .846
FT                   /codon_start=1
FT                   /db_xref="GOA:Q8BD59"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="UniProtKB/TrEMBL:Q8BD59"
FT                   /gene="cp"
FT                   /product="coat protein"
FT                   /protein_id="AAN17225.1"
FT                   /translation="GLNEKLKEKEKQKEKEKEKDKQKDKDNDGASDGNDVSTSTKTGER
FT                   DRDVNAGTSGTFTVPRIKSFTDKMILPRIKGKSVLNLNHLLQYNPQQIDISNTRATQSQ
FT                   FEKWYEGVRNDYGLNDNEMQVMLNGLMVWCIENGTSPDMSGVWVMMDGETQVDYPIKPL
FT                   IEHATPSFRQIMAHFSNAAEAYIAKRNATERYMPRYGIKRNLTDISLARYAFDFYEVNS
FT                   KTPDRAREAHMQMRAAALRSASRRMFGMDGSVSNKEENTERHTVEDVNRDMHSLPGMRN
FT                   "
XX
SQ   Sequence 846 BP; 294 A; 140 C; 207 G; 205 T; 0 other;

af506878 Length: 846  24-SEP-2002  Type: N  Check: 7196  ..

       1  ggtctaaatg aaaagctcaa agaaaaggaa aaacaaaaag agaaagaaaa
      51  agaaaaagat aaacaaaaag ataaggataa tgatggagct agtgacggaa
     101  atgatgtgtc aactagcaca aagactggag agagagatag agatgtcaat
     151  gccggaacta gtggaacttt cactgttcca aggataaagt cttttactga
     201  taagatgatt ttaccaagaa ttaagggaaa gtctgtcctt aatttaaatc
     251  atcttcttca gtataatccg caacaaattg acatctcaaa cactcgtgcc
     301  actcaatctc aatttgaaaa gtggtatgag ggagtgagga atgattatgg
     351  tcttaatgat aacgaaatgc aagtgatgtt aaatggtttg atggtttggt
     401  gtatcgaaaa tggtacgtct ccagacatgt ctggtgtctg ggtaatgatg
     451  gatggggaaa ctcaggttga ttatcccatc aaacctttaa ttgaacatgc
     501  aactccttca ttcaggcaaa tcatggctca cttcagtaac gcggcagagg
     551  catatatcgc gaagagaaat gcaactgaga ggtacatgcc gcggtatgga
     601  attaaaagga atttgactga cattagtctc gctcgatatg cttttgattt
     651  ctatgaggtg aattcgaaaa cacctgatag ggctcgtgaa gctcatatgc
     701  agatgagggc tgcagcgcta cgcagtgcta gtcgcagaat gttcggaatg
     751  gacggcagtg tcagtaacaa ggaagaaaac acggagaggc acacagtgga
     801  agatgtcaac agagacatgc actctctccc gggtatgcgc aattaa