Sequence of DPV Papaya ringspot virus

Papaya ringspot virus isolate VNP-09 coat protein (cp) gene, partial cds.

ACC No: AF506882

Dated: 2002-09-24 | Length: 846 | CRC: -571858854

                
ID   AF506882   standard; genomic RNA; VRL; 846 BP.
XX
AC   AF506882;
XX
SV   AF506882.1
XX
DT   24-SEP-2002 (Rel. 73, Created)
DT   24-SEP-2002 (Rel. 73, Last updated, Version 1)
XX
DE   Papaya ringspot virus isolate VNP-09 coat protein (cp) gene, partial cds.
XX
KW   .
XX
OS   Papaya ringspot virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-846
RX   PUBMED; 12237441.
RA   Bateson M.F., Lines R.E., Revill P., Chaleeprom W., Ha C.V., Gibbs A.J.,
RA   Dale J.L.;
RT   "On the evolution and molecular epidemiology of the potyvirus Papaya
RT   ringspot virus";
RL   J. Gen. Virol. 83(Pt 10):2575-2585(2002).
XX
RN   [2]
RP   1-846
RA   Bateson M.F., Lines R.E., Revill P., Chaleeprom W., Ha C.V., Gibbs A.J.,
RA   Dale J.L.;
RT   ;
RL   Submitted (29-APR-2002) to the EMBL/GenBank/DDBJ databases.
RL   School of Life Sciences, Queensland University of Technology, 2 George St,
RL   Brisbane, Queensland 4000, Australia
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .846
FT                   /country="Viet Nam"
FT                   /db_xref="taxon:12205"
FT                   /mol_type="genomic RNA"
FT                   /note="biotype: P"
FT                   /organism="Papaya ringspot virus"
FT                   /isolate="VNP-09"
FT                   /specific_host="Carica papaya"
FT   CDS             <1. .846
FT                   /codon_start=1
FT                   /db_xref="GOA:Q8BD55"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="UniProtKB/TrEMBL:Q8BD55"
FT                   /gene="cp"
FT                   /product="coat protein"
FT                   /protein_id="AAN17229.1"
FT                   /translation="DLNEKLKEKEKQKEKEEEKDKQKDKDNDGASDGNDVSTSTKTGER
FT                   DRDVNAGTSGTFTVPRIKSFTDKMILPRVKGKSVLNLNHLLQYNPQQIDISNTRATQSQ
FT                   FEKWYEGVRNDYGLSDNEMQVMLNGLMVWCIENGTSPDISGVWVMMDGETQVDYPIKPL
FT                   IEHATPSFRQIMAHFSNAAEAYIAKRNATERYMPRYGIKRNLTDISLARYAFDFYEVNS
FT                   KTPDRAREAHMQMKAAALRNTSRRMFGMDGSVSNKEENTERHTVEDVNRDMHSLLGMRN
FT                   "
XX
SQ   Sequence 846 BP; 303 A; 138 C; 200 G; 204 T; 1 other;

af506882 Length: 846  24-SEP-2002  Type: N  Check: 6554  ..

       1  gatttgaatg aaaagctaaa agaaaaggaa aaacagaaag agaaagaaga
      51  agaaaaagat aaacaaaaag ataaagataa tgatggagct agtgacggaa
     101  atgatgtgtc aactagcaca aaaacaggag agagagatag agatgttaac
     151  gccggaacta gtggaacttt cactgttcca aggataaagt cttttactga
     201  taagatgatt ttaccaagag ttaagggaaa gtctgtcctt aatttaaatc
     251  atcttcttca gtataatccg caacaaattg acatctcaaa cactcgtgcc
     301  actcaatctc aatttgaaaa gtggtatgag ggagtgagga atgattatgg
     351  tcttagtgat aacgaaatgc aagtgatgtt aaatggttta atggtttggt
     401  gtatcgaaaa tggtacatct ccagacatat ctggtgtttg ggtaatgatg
     451  gatggggaaa cccaggtcga ttatcccatc aaacctttaa ttgaacatgc
     501  aactccttca ttcaggcaaa tcatggctca cttcagtaac gcggcagagg
     551  catacatcgc aaagagaaat gcaactgaga ggtacatgcc gcggtatgga
     601  attaaaagga atttgactga cattagtctc gctcgatatg ctttcgattt
     651  ctatgaggtg aattcgaaaa cacctgatag ggctcgtgaa gcycatatgc
     701  agatgaaagc tgcagcgcta cgtaatacta gtcgcagaat gttcggaatg
     751  gatggcagtg tcagtaacaa ggaagaaaac acggagagac acacagtgga
     801  agatgtcaac agagacatgc actctctcct gggtatgcgc aattaa