Sequence of DPV Papaya ringspot virus

Papaya ringspot virus isolate THW-08 coat protein (cp) gene, partial cds.

ACC No: AF506890

Dated: 2002-09-24 | Length: 834 | CRC: 2058559687

                
ID   AF506890   standard; genomic RNA; VRL; 834 BP.
XX
AC   AF506890;
XX
SV   AF506890.1
XX
DT   24-SEP-2002 (Rel. 73, Created)
DT   24-SEP-2002 (Rel. 73, Last updated, Version 1)
XX
DE   Papaya ringspot virus isolate THW-08 coat protein (cp) gene, partial cds.
XX
KW   .
XX
OS   Papaya ringspot virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-834
RX   PUBMED; 12237441.
RA   Bateson M.F., Lines R.E., Revill P., Chaleeprom W., Ha C.V., Gibbs A.J.,
RA   Dale J.L.;
RT   "On the evolution and molecular epidemiology of the potyvirus Papaya
RT   ringspot virus";
RL   J. Gen. Virol. 83(Pt 10):2575-2585(2002).
XX
RN   [2]
RP   1-834
RA   Bateson M.F., Lines R.E., Revill P., Chaleeprom W., Ha C.V., Gibbs A.J.,
RA   Dale J.L.;
RT   ;
RL   Submitted (29-APR-2002) to the EMBL/GenBank/DDBJ databases.
RL   School of Life Sciences, Queensland University of Technology, 2 George St,
RL   Brisbane, Queensland 4000, Australia
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .834
FT                   /country="Thailand: Pathum Thani"
FT                   /db_xref="taxon:12205"
FT                   /mol_type="genomic RNA"
FT                   /note="biotype: W"
FT                   /organism="Papaya ringspot virus"
FT                   /isolate="THW-08"
FT                   /specific_host="Cucumis sativus"
FT   CDS             <1. .>834
FT                   /codon_start=1
FT                   /db_xref="GOA:Q8BD47"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="UniProtKB/TrEMBL:Q8BD47"
FT                   /gene="cp"
FT                   /product="coat protein"
FT                   /protein_id="AAN17237.1"
FT                   /translation="GLNEKLKEKEKQKEEKDKQKDKVGNDASDGNDVSTSIKTGERDRD
FT                   VNAGTSGTFTVPRIKSFTDKMILPRVKGKTVLNLNHLLQYNPQQIDISNTRATQTQFEK
FT                   WYEGVRNDYGLNDNEMQVMLNGLMVWCIENGTSPDISGVWVMMDGETQVDYPIKPLIEH
FT                   ATPSFRQIMAHFSNAAEAYIAKRNATERYMPRYGIKRNLTDISLARYAFDFYEVNSKPP
FT                   DRAREAHIQMKAAALRNTGRRMFGMDGSVSNKEENTERHTVEDVNRDMHSLLGMRN"
XX
SQ   Sequence 834 BP; 282 A; 148 C; 207 G; 197 T; 0 other;

af506890 Length: 834  24-SEP-2002  Type: N  Check: 5706  ..

       1  ggtttaaatg agaagctcaa agagaaagaa aaacagaagg aagaaaaaga
      51  taaacaaaaa gataaggttg gtaatgatgc tagtgacgga aatgatgtgt
     101  caactagcat aaaaactgga gagagagata gagatgtcaa tgctggaact
     151  agtggaactt tcactgttcc gaggataaag tcatttactg ataagatgat
     201  tttaccaaga gttaagggaa aaactgtcct taatttaaat catcttcttc
     251  agtataatcc gcaacagatt gacatctcaa acactcgtgc cactcaaact
     301  caattcgaga agtggtatga gggggtgagg aatgactacg gtctcaatga
     351  caatgaaatg caggtgatgt taaatggttt gatggtttgg tgtatcgaaa
     401  atggtacatc cccagacata tctggtgtct gggtaatgat ggatggggaa
     451  acccaagttg attatcccat caagccttta attgagcacg caactccttc
     501  attcaggcag atcatggctc acttcagtaa cgcggcagag gcatacatcg
     551  ctaagagaaa tgcaactgag aggtacatgc cgcggtatgg aatcaagagg
     601  aatttgactg acattagtct cgccagatat gctttcgatt tctatgaggt
     651  gaattcaaaa ccacctgata gggctcgtga agctcacata cagatgaaag
     701  ctgcagctct gcgtaacact ggtcgcagaa tgtttgggat ggacggcagt
     751  gtcagtaaca aggaagaaaa cacggagaga cacacagtgg aagatgtcaa
     801  cagagacatg cactctctcc tgggtatgcg caac