Sequence of DPV Papaya ringspot virus

Papaya ringspot virus isolate THP-13 coat protein (cp) gene, partial cds.

ACC No: AF506899

Dated: 2002-09-24 | Length: 834 | CRC: -777200245

                
ID   AF506899   standard; genomic RNA; VRL; 834 BP.
XX
AC   AF506899;
XX
SV   AF506899.1
XX
DT   24-SEP-2002 (Rel. 73, Created)
DT   24-SEP-2002 (Rel. 73, Last updated, Version 1)
XX
DE   Papaya ringspot virus isolate THP-13 coat protein (cp) gene, partial cds.
XX
KW   .
XX
OS   Papaya ringspot virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-834
RX   PUBMED; 12237441.
RA   Bateson M.F., Lines R.E., Revill P., Chaleeprom W., Ha C.V., Gibbs A.J.,
RA   Dale J.L.;
RT   "On the evolution and molecular epidemiology of the potyvirus Papaya
RT   ringspot virus";
RL   J. Gen. Virol. 83(Pt 10):2575-2585(2002).
XX
RN   [2]
RP   1-834
RA   Bateson M.F., Lines R.E., Revill P., Chaleeprom W., Ha C.V., Gibbs A.J.,
RA   Dale J.L.;
RT   ;
RL   Submitted (29-APR-2002) to the EMBL/GenBank/DDBJ databases.
RL   School of Life Sciences, Queensland University of Technology, 2 George St,
RL   Brisbane, Queensland 4000, Australia
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .834
FT                   /country="Thailand: Nakhon Ratchasima"
FT                   /db_xref="taxon:12205"
FT                   /mol_type="genomic RNA"
FT                   /note="biotype: P"
FT                   /organism="Papaya ringspot virus"
FT                   /isolate="THP-13"
FT                   /specific_host="Carica papaya"
FT   CDS             <1. .>834
FT                   /codon_start=1
FT                   /db_xref="GOA:Q8BD38"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="UniProtKB/TrEMBL:Q8BD38"
FT                   /gene="cp"
FT                   /product="coat protein"
FT                   /protein_id="AAN17246.1"
FT                   /translation="GLNEKLKDKEKQKEEKDKQKGKENNEASDGNDVSTSTKTGERDRD
FT                   VNAGTSGTFTVPRIKLFTDKMILPRIKGKTVLNLNHLLRYNPQQIDISNTRATQSQFEK
FT                   WYEGVRNDYGLNDNEMQVMLNGLMVWCIENGTSPDISGVWVMMDGESQVDYPIKPLIEH
FT                   ATPSFRQIMAHFSNAAEAYIAKRNATERYMPRYGLKRNLTDISLARYAFDFYEVNSKTP
FT                   DRAREAHMQMKAAALRNTGRRMFGMDGSVSNKEENTERHTVEDVNRDMHSLLGMRN"
XX
SQ   Sequence 834 BP; 291 A; 151 C; 199 G; 193 T; 0 other;

af506899 Length: 834  24-SEP-2002  Type: N  Check: 4306  ..

       1  ggtcttaatg aaaagctcaa agataaagaa aaacagaaag aagaaaaaga
      51  taaacaaaaa ggtaaagaaa ataatgaagc tagtgacgga aatgatgtgt
     101  caactagcac aaaaactgga gagagagata gagatgtcaa tgccggaact
     151  agtggtactt tcactgttcc gagaataaaa ttattcactg acaagatgat
     201  tttaccaaga attaaaggaa aaactgtcct taatttaaat catcttcttc
     251  ggtataatcc gcaacaaata gacatctcaa acactcgtgc cactcaatct
     301  caattcgaaa agtggtatga gggagtgagg aatgattatg gtcttaatga
     351  taacgaaatg caagtgatgt taaatggttt gatggtttgg tgcatcgaaa
     401  atggaacatc cccagacata tctggtgtct gggtgatgat ggatggggaa
     451  tcccaagtcg attatcccat caagcctttg atcgaacatg caactccttc
     501  gttcaggcaa atcatggctc acttcagtaa cgcggcagag gcatacatcg
     551  caaagaggaa tgctactgag aggtacatgc cgcggtatgg actcaagagg
     601  aatttgactg acattagtct cgctagatat gctttcgact tctatgaggt
     651  gaactcaaaa acacctgata gggctcgtga agctcatatg cagatgaagg
     701  ctgcagcgct gcgcaacact ggtcgcagaa tgtttggaat ggacggcagt
     751  gtcagtaaca aggaagaaaa cacggagaga cacacagtgg aagatgtcaa
     801  cagagacatg cactctctcc tgggtatgcg caat