Sequence of DPV Papaya ringspot virus

Papaya ringspot virus isolate THP-01 coat protein (cp) gene, partial cds.

ACC No: AF506904

Dated: 2002-09-24 | Length: 834 | CRC: 1345340966

                
ID   AF506904   standard; genomic RNA; VRL; 834 BP.
XX
AC   AF506904;
XX
SV   AF506904.1
XX
DT   24-SEP-2002 (Rel. 73, Created)
DT   24-SEP-2002 (Rel. 73, Last updated, Version 1)
XX
DE   Papaya ringspot virus isolate THP-01 coat protein (cp) gene, partial cds.
XX
KW   .
XX
OS   Papaya ringspot virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-834
RX   PUBMED; 12237441.
RA   Bateson M.F., Lines R.E., Revill P., Chaleeprom W., Ha C.V., Gibbs A.J.,
RA   Dale J.L.;
RT   "On the evolution and molecular epidemiology of the potyvirus Papaya
RT   ringspot virus";
RL   J. Gen. Virol. 83(Pt 10):2575-2585(2002).
XX
RN   [2]
RP   1-834
RA   Bateson M.F., Lines R.E., Revill P., Chaleeprom W., Ha C.V., Gibbs A.J.,
RA   Dale J.L.;
RT   ;
RL   Submitted (29-APR-2002) to the EMBL/GenBank/DDBJ databases.
RL   School of Life Sciences, Queensland University of Technology, 2 George St,
RL   Brisbane, Queensland 4000, Australia
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .834
FT                   /country="Thailand: Khon Kaen"
FT                   /db_xref="taxon:12205"
FT                   /mol_type="genomic RNA"
FT                   /note="biotype: P"
FT                   /organism="Papaya ringspot virus"
FT                   /isolate="THP-01"
FT                   /specific_host="Carica papaya"
FT   CDS             <1. .>834
FT                   /codon_start=1
FT                   /db_xref="GOA:Q8BD33"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="UniProtKB/TrEMBL:Q8BD33"
FT                   /gene="cp"
FT                   /product="coat protein"
FT                   /protein_id="AAN17251.1"
FT                   /translation="GLNEKLKDKEKQKEEKDKQKGKENTEASDGNDVSTSTKTGERDRD
FT                   VNAGTSGTFTVPRIKLFTDKMILPRIKGKTVLNLNHLLQYNPQQIDISNTRATQSQFEK
FT                   WYEGVRNDYGLNDNEMQVMLNGLMVWCIENGTSPDISGVWVMMDGETQVDYPIKPLIEH
FT                   ATPSFRQIMAHFSNAAEAYIAKRNATERYMPRYGIKRNLTDISLARYAFDFYEVNSKTP
FT                   DRAREAHMQMKAAALRNTGRRMFGMDGSVRNKEENTERHTVEDVNRDMHSLLGMRN"
XX
SQ   Sequence 834 BP; 291 A; 155 C; 199 G; 189 T; 0 other;

af506904 Length: 834  24-SEP-2002  Type: N  Check: 1160  ..

       1  ggtcttaatg agaagctcaa agataaagaa aaacagaaag aagaaaaaga
      51  taaacaaaaa ggtaaagaaa atactgaagc tagtgacgga aacgatgtgt
     101  caactagcac aaaaactgga gagagagata gagatgtcaa tgccggaact
     151  agtggtactt tcactgttcc gagaataaaa ttatttaccg acaagatgat
     201  tttaccaaga attaaaggaa aaactgtcct taatttaaat catcttcttc
     251  agtataatcc gcaacaaata gacatctcaa acactcgcgc cactcaatct
     301  caattcgaga agtggtatga gggagtgagg aatgattacg gtcttaatga
     351  taatgaaatg caagtaatgt taaatggttt gatggtttgg tgcatcgaaa
     401  atggaacatc cccagacata tctggtgtct gggtgatgat ggatggggaa
     451  acccaagtcg attatcccat caagcctttg atcgaacacg caactccttc
     501  gttcaggcaa atcatggctc acttcagtaa cgcggcagag gcatacatcg
     551  caaagaggaa tgctactgag aggtacatgc cgcggtatgg aatcaagagg
     601  aatctgactg acattagtct cgctagatat gctttcgact tctatgaggt
     651  gaattcaaaa acacctgata gggctcgtga agctcatatg cagatgaagg
     701  ctgcagcgct gcgcaacact ggtcgcagaa tgtttggaat ggacggcagt
     751  gtccgtaaca aggaagaaaa cacggagaga cacacagtgg aagatgtcaa
     801  cagagacatg cactctctcc tgggtatgcg caat