Sequence of DPV Wheat streak mosaic virus
Wheat streak mosaic virus isolate NE96 polyprotein gene, partial cds.
ACC No: AF511632
Dated: 2009-02-19 | Length: 1267 | CRC: -1237828661
ID AF511632; SV 1; linear; genomic RNA; STD; VRL; 1267 BP.
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AC AF511632;
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DT 06-JUN-2002 (Rel. 72, Created)
DT 19-FEB-2009 (Rel. 99, Last updated, Version 5)
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DE Wheat streak mosaic virus isolate NE96 polyprotein gene, partial cds.
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KW .
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OS Wheat streak mosaic virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC Tritimovirus.
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RN [1]
RP 1-1267
RX DOI; 10.1006/viro.2001.1569.
RX PUBMED; 12429516.
RA Stenger D.C., Seifers D.L., French R.;
RT "Patterns of polymorphism in wheat streak mosaic virus: sequence space
RT explored by a clade of closely related viral genotypes rivals that between
RT the most divergent strains";
RL Virology 302(1):58-70(2002).
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RN [2]
RP 1-1267
RA Stenger D.C., Seifers D.L., French R.;
RT ;
RL Submitted (14-MAY-2002) to the EMBL/GenBank/DDBJ databases.
RL USDA-ARS, University of Nebraska, 344 Keim Hall, Lincoln, NE 68583, USA
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FH Key Location/Qualifiers
FH
FT source 1. .1267
FT /organism="Wheat streak mosaic virus"
FT /isolate="NE96"
FT /mol_type="genomic RNA"
FT /db_xref="taxon:31741"
FT CDS <1. .1134
FT /codon_start=1
FT /product="polyprotein"
FT /note="coat protein cistron of polyprotein"
FT /db_xref="GOA:Q8JQX9"
FT /db_xref="InterPro:IPR001592"
FT /db_xref="UniProtKB/TrEMBL:Q8JQX9"
FT /protein_id="AAM48226.1"
FT /translation="VEDLYLTGTRTDLGEEIKECGEQYCVYESSEAATDAVLAAANAGT
FT GSASSSGSTQSSQSASTASGSGSSPSGSGSGAAGGSGSGSAQTQSNNVSVMAGLDTGGA
FT KTGQGSGSKGTGGSFTSNPVRTGGRATDVQDQTPGLVFPAPKITTKAIYMPKTVRDKIK
FT PEMINNMIKYQPRAELIDNRYATTEQLNTWIKEASEGLDVTEDVFINTLLPGWVYHCII
FT NTTSPENRALGTWRVVNNAGKDNEQQLEFKIEPMYKAAKPSLRAIMRHFGEGARVMIEE
FT SVRIGKPIIPRGFDKAGVLSINNIVAACDFIMRGADDTPNFVQVQNSVAVNRLRGIQNK
FT LFAQARLSAGTNEDNSRHDADDVRENTHSFNGVNALA"
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SQ Sequence 1267 BP; 386 A; 270 C; 343 G; 268 T; 0 other;
af511632 Length: 1267 19-FEB-2009 Type: N Check: 2788 ..
1 gttgaggatt tgtacttgac tgggacccga acggatttag gagaagagat
51 taaggaatgt ggagagcaat actgcgtgta cgaatcgagt gaggccgcaa
101 ccgacgctgt cttggcggca gcaaatgcag gaactggtag tgcatcgagt
151 agtggaagta ctcaatcaag tcagagcgca agtactgcta gcggatcagg
201 gagttcacca tcaggatcag gttctggagc agcgggtgga tcaggttctg
251 gatcagcaca aacacaatct aataacgtat ctgtcatggc tggcctcgac
301 acgggaggag ctaagacagg tcaaggatca ggatcaaaag ggacgggtgg
351 ttcattcaca tcgaatcccg tgcgaactgg aggccgagca acggatgtgc
401 aagatcagac accaggttta gtgtttccag caccaaagat cacaacaaag
451 gccatataca tgccaaaaac tgtacgcgac aagataaaac ctgaaatgat
501 aaataacatg atcaaatacc aaccgcgtgc tgaacttatc gacaacagat
551 atgccacaac tgaacaactc aacacctgga taaaagaggc atctgaaggg
601 cttgacgtga cagaggatgt tttcataaac accttacttc caggatgggt
651 ctaccactgc ataatcaaca caacgagtcc agagaacaga gcactaggaa
701 cttggcgtgt tgtgaacaat gcaggcaagg acaatgagca gcaactcgag
751 tttaagattg aaccgatgta caaagctgcg aagccatcac ttcgagccat
801 tatgcgccac tttggcgagg gagctcgagt gatgatcgag gagagtgttc
851 gaattggaaa acctatcata ccaaggggct tcgacaaggc cggtgtgcta
901 agcatcaaca atattgtggc agcgtgtgat ttcatcatgc gcggtgcaga
951 tgacacacca aattttgtgc aagtgcagaa cagcgttgca gtaaacaggc
1001 tacgcggaat acagaacaag ctgtttgcac aggcacggct gagtgcgggt
1051 actaatgagg acaactcacg tcatgatgca gatgatgtga gggagaacac
1101 gcacagtttc aatggtgtaa acgctcttgc gtgagcacag tagaaactac
1151 aaatccacga gtaccaggat ttgagcgaaa taacgctgcg tttcgttaac
1201 ccttcgttgt tactaggtgt gtacttctcc acgagaggcg tgcattcttg
1251 gtagctatgt gtgggtt