Sequence of DPV Barley yellow mosaic virus
Barley yellow mosaic virus segment RNA1, complete sequence.
ACC No: AF536958
Dated: 2006-05-17 | Length: 7639 | CRC: 1276227419
ID AF536958 standard; genomic RNA; VRL; 7639 BP.
XX
AC AF536958;
XX
SV AF536958.1
XX
DT 28-AUG-2003 (Rel. 77, Created)
DT 17-MAY-2006 (Rel. 87, Last updated, Version 2)
XX
DE Barley yellow mosaic virus segment RNA1, complete sequence.
XX
KW .
XX
OS Barley yellow mosaic virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC Bymovirus.
XX
RN [1]
RP 1-7639
RX PUBMED; 16604449.
RA Lee K.J., Choi M.K., Lee W.H., Rajkumar M.;
RT "Molecular analysis of korean isolate of barley yellow mosaic virus";
RL Virus Genes 32(2):171-176(2006).
XX
RN [2]
RP 1-7639
RA Lee K., Choi M., Lee W.;
RT ;
RL Submitted (09-AUG-2002) to the EMBL/GenBank/DDBJ databases.
RL Department of Agricultural Biology, Bioresources Science College of
RL Agriculture, Chonbuk National University, 664-14 1-ga, Deokjin-dong,
RL Chonju, Chonbuk 561-756, Korea
XX
FH Key Location/Qualifiers
FH
FT source 1. .7639
FT /organism="Barley yellow mosaic virus"
FT /segment="RNA1"
FT /specific_host="barley cultivar baegdong"
FT /mol_type="genomic RNA"
FT /db_xref="taxon:12465"
FT CDS 172. .7407
FT /codon_start=1
FT /product="polyprotein"
FT /db_xref="GOA:Q71BD5"
FT /db_xref="InterPro:IPR001205"
FT /db_xref="InterPro:IPR001410"
FT /db_xref="InterPro:IPR001592"
FT /db_xref="InterPro:IPR001650"
FT /db_xref="InterPro:IPR001730"
FT /db_xref="InterPro:IPR007094"
FT /db_xref="InterPro:IPR007095"
FT /db_xref="InterPro:IPR011545"
FT /db_xref="InterPro:IPR013648"
FT /db_xref="UniProtKB/TrEMBL:Q71BD5"
FT /protein_id="AAQ10774.1"
FT /translation="MEQTLAQAVSRKSKTDTPMAEERKHFSPMNFSANFVAPELFYSAN
FT VRKIKNIFRERSTTRFLDAISSDFELVAFLTLSPAHLMQLETVLRHEMRSCVVPIVTSD
FT ASFETVAVIKTALDGMRFHFGYTTLEKGWISMMRHAESCLQESSSSAVNDLQTQIKRVG
FT SLLLSGKNRVEGCELSVLNLTARRFRIEYGLNGTYFGEHVAMLRGLKRYIYGTVPKEFL
FT WAKTKKHSLFTIPAWIKRTPIDCFLFCLRVIPILHRCGVAVSLIYWSCAAALNFPAFMS
FT FLFKRQFAKYLAHSFAKHSIYFMFLTIVAILWSFRTFTSQKPKIVLQARSTAEKEKKLM
FT MILASVVGITYLFDYDIAEALGNCLHKISRLSSYLLDDHQGIASRMFGASYGLQAGDSA
FT EDAVTTIISDLLSVTFKIVDEDASQGTVEDASETTFHSWVGVNTLAGRNMSRPLQYSVN
FT ETYALTPQNVQLQARKMADANNCWSMVVGHTGSGKSTYLPVQYSNYLSTKSDRRQQILI
FT CEPTQAATENVCAGVAANLGRAVYGRHEGWSRMGDHCIQVMTYGSALQCHAMDPSFIST
FT FDAIFLDEAHDVKEHSLVFESICDTFKSVRKFYVSATPRDGSVCPEAARKYPLHVETSV
FT CDSYRKFIAAQGGGDLLDISKHDTALVFLAGRPECIKAANAWNASVTGEKRAFSLSSDN
FT FATDFSMLTERLKTHKTIIFTTNIIETGVTLSVDCVVDFGHTMRPCLDLNQKALRLDRR
FT RVTRNERQQRIGRAGRLKDGYAIVCGDVDRAVNVISPDVLYGAALLSFKHNVPFYMNET
FT FESSWLEGITKAQADTMTIFKLPIFLTRDLINADGSVAKEFLDVLKKHQFTTSDIKQAP
FT SVTAKHIFPTWASYFSLHQALHYGDDKDEVPHELRYARVPFSVTTLSKFDWPALALACE
FT KHRASMSNVFAGIEEPARVVTLQTNPANIQASITHLTHMSKNYKTLIENNQHVRQSMVT
FT NVMYKWFSSTRITKDLDRNLRRCTDNLAVVEATLSSLRQILAGNTQVHATPHMQSTLED
FT IIGLQASDTLTEESLASALGIFVPKSNLFLLLATKGFKLVYVVCILLLVNLVYLGLRKW
FT REHLKQKGSNEILTNTMPVSEGGEILAEVMKMEPKMRKNIKKDMDAAVESKLCGFTFVF
FT PDDDKIGLEGKGNKYRPREDARLMYSTREDATLDAWNEKAKERRKKVTDKSEPELQSAY
FT EKRPYFNFYDLQTDSNILEAIFYTTEGDEFFRTADPNKDMNLVADKLRSFLDTKLVVGH
FT HQRQMLEETAKVVIKDTKGTAHHMDISQHDPDHLKQNGSGKIGYPEHRGQFRQEGPAKT
FT ADYDLGVEFGTDTDDITLEASTGILLSQVGVDVATRVGRICIGTFNMNCYFYSDWILVP
FT GHLQDRSGNVTIQFPDQTVQTTTDALNANGVKRFYGLDVIAIRRPAILRPRTKLVKAFA
FT IEEPVIAQMVFVDAQGVRKCTQSDWARKEENSGRWSHKISTVLGMCGCQFWTLERQIDG
FT IHVATNYTKKRNEFQPFTQEVVDFINGPGTKIPYCPWVFDRPACGYASHTALFEKPTTL
FT TDIIHMQASDGLHNINNAIEGFGSSLRGQLVSPPTESTRQRFDKLFGSGSFELIGQMNK
FT GLIDKHVIVGENDDVHDFMREHPTFTWLKDFMNEYAPSVLSYSAYYKDLCKYNRAKHVL
FT TYNSEELHYATKGLIKMLEDAGLTQGSVRTPQQVISDIQWNTSAGPSYQGKKRDLCAHL
FT SDDEVLHLAEVCRQQFLEGKSTGVWNGSLKAELRTIEKVEAEKTRVFTASPITSLFAMK
FT FYVDDFNKKFYATNLKAPHTVGINKFGRGWEKLHDKLNRPGWLHGSGDGSRFDSSIDPF
FT FFDVVKTIRKHFLPSEHHKAIDLIYDEILNTTICLANGMIIKKNVGNNSGQPSTVVDNT
FT LVLMTAFLYAYIHKTGDRELALLNERFIFVCNGDDNKFAISPQFDEEFGHDFSPELVEL
FT GLTYEFDDITSDICENPYMSLTMVKTPFGVGFSLPVERIIAIMQWSKKGGVLHSYLAGI
FT SAIYESFNTPKLFKSIYAYLLWLTEEHEAEILAAMTQSSTALPIPSMLDVYRLHYGDDE
FT IWLQAADPLTDAQKEDARIAAADGARFELADADRRRKVEADRVEAARVKKAADAALKPV
FT NLTATRTPTEDDGKLKTPSGARIPSSAADGNWSVPATKQVNAGLTLKIPLNKLKSVPKS
FT VMEHNNSVALESELKAWTDAVRTSLGITTDEAWIDALIPFIGWCCNNGTSDKHAENQVM
FT QIDSGKGAVTEMSLSPFIVHARMNGGLRRIMRNYSDETVLLITNNKLVAHWSMKHGASA
FT NAKYAFDFFVPRSWMNPQDIEVSKQARLAALGTGTYNTMLTSDTTNLRKTTNHRVLDSD
FT GHPELT"
XX
SQ Sequence 7639 BP; 2164 A; 1796 C; 1701 G; 1978 T; 0 other;
af536958 Length: 7639 17-MAY-2006 Type: N Check: 3064 ..
1 aaaataaaac aaaacaaaac cgaacaaagc aaaacgaaac aaacacaaac
51 atcacgcgct tcccaagctc acaatacttg tagagtgatt tctgtcatcc
101 tactcttcgt gagcttttcc gcaaatcaac ccgtttgctt ttgcgccccc
151 ttcaccttca ctctcgctcc tatggagcaa accctagctc aagctgtgtc
201 acggaaaagc aaaacagaca cacctatggc agaagagcgg aaacatttca
251 gccccatgaa tttttccgca aactttgttg ctcctgagct cttttatagt
301 gccaatgtga ggaaaatcaa aaatatcttc agagagcgca gcacaactcg
351 gtttctggac gcgatttcaa gtgactttga gcttgtcgct tttctcacct
401 tgagtcctgc tcatttaatg caacttgaaa cagttctgcg ccacgagatg
451 cgttcgtgcg ttgtgccaat tgtcacctct gatgccagct ttgaaacagt
501 tgctgtcatc aaaaccgctc tggatggcat gagattccac tttggataca
551 ctactcttga aaaggggtgg atttccatga tgcgccatgc ggagagttgc
601 ctgcaagaga gctcttcttc ggctgtgaat gatctgcaga cgcaaattaa
651 acgtgttgga tcgctgctcc tgagtggaaa aaatcgcgta gaaggctgcg
701 aactatctgt cttgaacctc accgcgcgac gtttcaggat cgaatatggg
751 ctaaacggta catactttgg cgaacatgtt gctatgctac gcggcttaaa
801 acgttatatc tatggtaccg taccaaaaga gtttttgtgg gcgaaaacca
851 aaaagcactc actgttcaca atccccgcgt ggatcaagcg tacgcccatc
901 gattgtttct tgttctgtct tcgcgttatc cctatcttac ataggtgtgg
951 tgttgccgtg tcacttattt actggtcgtg tgctgctgct ttaaattttc
1001 ctgcttttat gtctttctta tttaagcgtc agttcgctaa gtatttagct
1051 cactcctttg ctaaacactc catctacttt atgtttttaa ctatagttgc
1101 tattttatgg tcttttcgca cttttacttc tcaaaaacca aaaatagtgc
1151 ttcaagctag aagcacagca gaaaaagaga agaagcttat gatgattcta
1201 gctagcgtcg ttgggatcac ttacctcttc gactacgaca tagcagaagc
1251 tcttgggaat tgtctacata aaataagccg tctgtcctca tatctcctcg
1301 acgaccatca aggcattgca tcacgaatgt ttggagcaag ctacgggctt
1351 caagctggcg acagtgctga ggatgcagtc acaacgataa tcagcgactt
1401 actgtctgtt acttttaaaa ttgtggatga agacgcatca caaggcaccg
1451 tggaggacgc atcagagaca accttccaca gttgggttgg tgttaacaca
1501 cttgcaggtc gcaatatgtc aagaccactc cagtatagcg tcaatgaaac
1551 gtatgcactc acacctcaaa atgtccagct ccaagcgcga aaaatggcag
1601 acgctaacaa ctgctggtca atggttgttg gtcatacggg atctggaaag
1651 tccacatact tacctgtgca gtactccaac tacttatcca ctaagagtga
1701 taggcgacag caaatcctta tctgcgagcc aactcaggct gccactgaga
1751 atgtttgcgc tggcgtcgct gccaatctcg gcagagctgt ttatgggcgc
1801 catgagggtt ggtccagaat gggggatcat tgcattcaag ttatgacgta
1851 tggttctgcg ctccagtgtc atgccatgga ccctagcttc atatcaactt
1901 tcgacgcaat tttccttgat gaagcacacg acgttaaaga acactctcta
1951 gtctttgaga gcatttgtga cacattcaaa tccgttcgaa agttctatgt
2001 ttcagcaact cccagagatg gtagtgtttg tcctgaagca gccaggaaat
2051 atcctttaca tgttgaaact agcgtttgcg attcgtatcg aaagttcatt
2101 gcagctcaag gcgggggaga tttgttggac atctcaaaac atgacacagc
2151 tttagttttt ctagcgggac ggcccgagtg tattaaagct gctaatgcct
2201 ggaatgctag tgtcaccggt gagaagcgcg ccttttcctt gtcgagcgac
2251 aactttgcta ccgacttctc aatgctaact gagaggctca aaacacacaa
2301 aaccatcatc ttcaccacga acataattga gacaggtgtt actctcagcg
2351 ttgactgtgt tgtggatttc ggccatacaa tgcgcccatg tttagatctt
2401 aatcaaaaag cattgcgtct tgatcgacgc agagtgacgc gaaacgaaag
2451 acagcagaga attgggcgag cgggtcggct caaagacgga tacgccatag
2501 tgtgtggaga tgttgataga gctgtaaacg tcatctctcc tgatgttctt
2551 tatggtgccg ctctcctgag ttttaaacac aatgtgcctt tctacatgaa
2601 cgaaacattt gagagttcct ggttggaggg tattacaaag gcacaagcag
2651 atacaatgac aatcttcaag cttcctatat ttctaacacg agatctcatc
2701 aatgcagatg gctcagttgc taaggagttt ctcgatgtcc taaagaagca
2751 tcaattcaca acaagcgaca taaagcaagc accaagtgtc acagccaaac
2801 acatcttccc aacttgggct tcatacttct ctctccacca agcacttcat
2851 tatggtgatg ataaggatga ggtaccacac gaattgcgat atgcgcgcgt
2901 tcccttctcc gtcacaactt tgagcaaatt cgattggcca gccttagctc
2951 ttgcatgtga gaaacataga gcttccatgt caaatgtgtt tgctggcatc
3001 gaagaacctg cacgcgttgt cactctacaa acaaatcctg cgaacataca
3051 agcgagcatc acacatttaa cgcacatgag taagaactac aaaactctta
3101 ttgaaaataa tcagcacgtg cgccaatcca tggtgacgaa tgttatgtat
3151 aagtggttct cttctactcg catcacaaaa gatcttgata gaaacttgcg
3201 aagatgcacg gataaccttg cagttgtcga ggccacactc agctcactta
3251 gacaaatctt agctggcaac acgcaggttc atgcaacgcc acacatgcag
3301 agcactcttg aggatattat tgggcttcaa gctagcgaca cacttacgga
3351 agagagctta gcaagcgcac ttggcatctt tgttccgaag agcaacctct
3401 ttctgctgct agctaccaaa ggttttaaac ttgtgtacgt tgtctgcatc
3451 ttacttcttg tgaaccttgt ttatcttggt cttcgcaagt ggcgcgagca
3501 tcttaagcag aaaggaagca atgaaatcct aactaacaca atgccagtta
3551 gcgaaggggg ggaaattctc gctgaggtca tgaaaatgga gcctaaaatg
3601 agaaagaaca tcaagaagga tatggatgca gccgttgaga gcaaattatg
3651 tggtttcacc tttgtttttc cagatgatga taaaattggt cttgaaggta
3701 agggaaacaa gtaccgccct cgcgaagacg ctcgtctcat gtactccacg
3751 agggaagacg ccacccttga cgcttggaat gagaaagcaa aggaaaggcg
3801 taagaaggtg accgacaaat ctgagccaga gctccagagc gcctatgaaa
3851 agagaccata cttcaatttc tacgaccttc aaacagatag caacattctg
3901 gaagctattt tctacaccac tgaaggcgat gagtttttcc gaacagcaga
3951 tcccaacaag gacatgaact tggttgctga caaactacgc tcttttctcg
4001 acacaaagct tgttgttgga caccaccagc ggcagatgct agaagaaaca
4051 gccaaggttg tcatcaaaga tacgaaggga actgcgcacc acatggacat
4101 ttcacagcat gatccagacc atctaaagca gaatgggtcc ggcaaaattg
4151 gatatccaga acaccggggg cagtttcgac aggaaggacc tgccaaaaca
4201 gcggattacg atcttggagt tgagtttggc accgacaccg atgacatcac
4251 gctcgaagcc tctactggga tattattgtc acaagttggg gtcgacgtcg
4301 caacccgagt tggaagaatt tgcattggta ctttcaacat gaactgttac
4351 ttctacagcg actggattct ggttccagga cacctgcaag acagatccgg
4401 taacgtgaca attcaatttc ctgaccaaac agtgcaaacc acaactgatg
4451 cactcaacgc aaatggtgtg aaacgattct atggattaga tgtgatagca
4501 attcggcgcc ctgctatttt gagacctcgc accaagttgg tcaaagcttt
4551 tgctattgag gaaccagtta tcgcacaaat ggtctttgtt gacgcacaag
4601 gagttcgtaa gtgtactcaa tctgattggg ccagaaagga ggagaattcc
4651 ggacgttggt cacataagat ttccactgtt cttggtatgt gtggatgcca
4701 gttctggacg ttggaaagac agattgatgg aatccatgtt gccacaaact
4751 acacaaagaa gcgcaacgag ttccaaccct tcactcagga ggtcgttgat
4801 ttcataaatg gacctggaac aaaaatcccc tactgcccat gggtattcga
4851 tagaccggct tgtgggtatg catcccacac agctttgttc gagaaaccaa
4901 ccacactaac tgacatcatt cacatgcaag cttctgatgg tttgcacaac
4951 atcaacaatg ccattgaggg tttcgggagt tcactgaggg gtcagctcgt
5001 gtcaccacct actgaatcca ccaggcaacg tttcgataag ctgtttggca
5051 gtggcagctt tgaactcatt gggcaaatga acaaaggctt aatcgacaaa
5101 cacgtaattg ttggggaaaa tgatgatgtt catgacttca tgcgcgagca
5151 cccaacattt acttggttga aagatttcat gaatgagtat gcgcctagtg
5201 ttttgtctta ctctgcttac tacaaagacc tttgcaagta taatcgtgca
5251 aaacatgtgc taacttacaa ctcggaagag ctccattatg caacgaaagg
5301 actgatcaag atgttggaag acgctggctt gacacaaggc agtgtgagga
5351 caccccaaca agtcatttca gacattcaat ggaacacttc cgctggacct
5401 agctatcaag ggaagaaacg cgacctctgt gcccatttga gtgatgatga
5451 ggtgctgcat cttgctgagg tgtgtcgcca acaatttctc gaaggcaagt
5501 caactggagt gtggaatggt tctttgaaag ctgagttgag aaccattgag
5551 aaagttgagg cggagaaaac gcgtgttttc acagcctctc ccataacaag
5601 cttgtttgcc atgaaattct acgttgacga ttttaacaag aagttctacg
5651 ccaccaatct gaaagccccc catactgttg gcatcaataa gttcggtagg
5701 ggatgggaaa aattgcatga taagcttaat cgccctggat ggttgcatgg
5751 tagtggagat ggttctaggt tcgatagctc catcgatcct ttcttcttcg
5801 acgttgtgaa aactattcgc aagcactttc tcccttctga gcatcataag
5851 gccattgatc tcatatacga tgagattctc aacacaacca tctgcctggc
5901 taatgggatg atcatcaaga agaatgttgg gaacaacagc gggcagccta
5951 gcactgttgt cgataacaca cttgtgctca tgactgcatt tctctacgca
6001 tacatccaca aaacaggaga ccgtgaattg gccttgctaa acgagcgttt
6051 catctttgtt tgcaatggcg atgacaacaa gtttgccata tctccgcagt
6101 ttgacgaaga gtttgggcat gatttctccc cagaacttgt tgaacttggg
6151 ctcacgtacg aatttgatga catcactagc gacatttgcg agaatcctta
6201 tatgtccctc accatggtga aaaccccttt tggcgttggt ttttctcttc
6251 ccgtggaaag aatcatagct atcatgcaat ggtccaagaa agggggagtt
6301 ctgcactcat atttggctgg catttccgca atttacgaat ccttcaacac
6351 accaaaactt ttcaaatcaa tctatgcgta tcttctttgg ctcactgagg
6401 agcacgaggc agaaattctc gcagccatga ctcaatcctc aactgctctt
6451 cccataccat caatgctcga tgtttatcgg ttgcattatg gcgatgatga
6501 aatttggctg caagctgctg atcctctcac tgatgcacaa aaagaagatg
6551 cacgcattgc tgcagctgat ggagcacgct tcgaactagc cgatgctgat
6601 cgtagacgta aagttgaggc tgaccgtgtg gaagcggcaa gagtcaaaaa
6651 ggcagctgat gctgcactaa aaccagttaa cctcacagca acacgcacgc
6701 ccacagaaga tgatggcaaa cttaaaacac catctggcgc tagaatacca
6751 tcatcagctg cagatggtaa ctggagcgtg ccagcaacga agcaagttaa
6801 cgctggtttg acactcaaaa ttcccctgaa taaactcaaa agtgtaccta
6851 agtctgttat ggagcataac aactcagtcg cactcgaatc tgagctaaaa
6901 gcctggactg atgctgtgcg cacaagtttg ggtatcacaa ctgatgaggc
6951 atggatcgat gccctcattc ccttcatcgg atggtgctgc aacaatggca
7001 cctcagacaa gcatgctgag aatcaagtaa tgcaaattga cagcggaaag
7051 ggagctgtta cagagatgag tctgtcccca tttattgttc atgctcgaat
7101 gaatggtgga ctccgaagga tcatgcgcaa ctacagtgat gaaaccgtct
7151 tactcatcac aaacaacaaa ctagttgcac attggtcaat gaagcatggc
7201 gcttctgcaa acgcaaaata cgctttcgat ttcttcgtcc cacgatcatg
7251 gatgaaccca caggatatcg aagtgtcaaa gcaagcgcgc ttagcagcac
7301 ttggaactgg aacgtataac accatgttaa cttccgacac taccaatctg
7351 cgtaagacaa ccaaccacag ggttctggac tcagatggac acccagaact
7401 aacctaaacc atcaccccgt gccttataca tcacccaccc ccactcataa
7451 ttcagtcttt aaattatgtt cgtgacgtct ttgtatcagg ctcggaacgg
7501 ttctatgatc catatgcctt tggcagttac aatgtcagca ttctcattga
7551 ggagtatgac agcgtttgat cagccgtttt caatcatccg tcgttggatg
7601 gtggtgcact tagtgcactt acgagtacca gaaggtaat