Sequence of DPV Yam mild mosaic virus

Yam mild mosaic virus isolate COL1 polyprotein gene, partial cds.

ACC No: AF548491

Dated: 2003-10-24 | Length: 1056 | CRC: 1003146289

                !!NA_SEQUENCE 1.0
ID   AF548491   standard; genomic RNA; VRL; 1056 BP.
XX
AC   AF548491;
XX
SV   AF548491.1
XX
DT   24-OCT-2003 (Rel. 77, Created)
DT   24-OCT-2003 (Rel. 77, Last updated, Version 1)
XX
DE   Yam mild mosaic virus isolate COL1 polyprotein gene, partial cds.
XX
KW   .
XX
OS   Yam mild mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1056
RA   Bousalem M., Dallot S., Fuji S., Natsuaki K.T.;
RT   "Origin, World-wide Dispersion, Bio-geographical Diversification, Radiation
RT   and Recombination: An Evolutionary History of Yam Mild Mosaic Virus
RT   (YMMV)";
RL   Unpublished.
XX
RN   [2]
RP   1-1056
RA   Bousalem M., Dallot S., Fuji S., Natsuaki K.T.;
RT   ;
RL   Submitted (27-SEP-2002) to the EMBL/GenBank/DDBJ databases.
RL   INRA-CRAG-URPV, INRA, Domaine Duclos, Prise d'eau, Petit Bourg 9717O,
RL   Guadeloupe
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1056
FT                   /country="Colombia"
FT                   /db_xref="taxon:87097"
FT                   /mol_type="genomic RNA"
FT                   /virion
FT                   /organism="Yam mild mosaic virus"
FT                   /isolate="COL1"
FT                   /specific_host="Dioscorea alata"
FT   CDS             <1. .915
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /protein_id="AAQ12301.1"
FT                   /translation="LRRLYLGDDDSDTELYNRYLRALIDNYNHDESDIVVHQASKEQTF
FT                   DAGQFSSKQSQPQGPASSSEGPGKDVNVGTKGTFSIPRIKAPMSKLTLPKLKGKVLVNL
FT                   EHLVEYEPEQVDISNKRASQEQLGQWVEAVKTSYDVDDEQLKIVLNGFMVWCIENGTSP
FT                   NINGNWYMIENGEQIEFPLKPIVENAKPTLRQIMAHFSDLAEAYIEKRNAKKAYMPGYG
FT                   LKRNLNDYSLARYAFDFFEITSKTPVRAREAHMQMKAAPLRNTRTRLFGLDGSVSNNEE
FT                   NTERHTSDDVSRDMHSLLGVRNI"
FT   mat_peptide     <1. .114
FT                   /product="NIb"
FT   mat_peptide     115. .912
FT                   /product="CP"
FT   3'UTR           916. .1056
XX
SQ   Sequence 1056 BP; 344 A; 196 C; 249 G; 267 T; 0 other;

AF548491  Length: 1056  November 11, 2003 09:09  Type: N  Check: 1547  ..

       1  ctacgaagac tgtatctagg agatgatgac agtgacacag agttgtacaa
      51  caggtatctg agagcgctca tagataacta caatcatgat gaatctgata
     101  tcgttgtcca tcaagcaagt aaggagcaaa catttgatgc cggacagttt
     151  tcaagcaagc aatcgcaacc acaaggacca gcaagtagtt ctgaaggacc
     201  agggaaggac gtcaatgttg gaacaaaggg gacattcagc attcctcgca
     251  tcaaagcacc aatgagcaaa ttgacgttac caaaactgaa agggaaagtt
     301  ttagtaaatc tagaacattt ggttgagtac gaaccggagc aagttgacat
     351  ttcaaacaag agagcttctc aagaacagct tggtcaatgg gtggaggcag
     401  tcaaaacttc atatgatgtg gatgatgaac aactgaaaat cgttttgaat
     451  ggattcatgg tgtggtgcat tgaaaacgga acttctccaa acattaatgg
     501  aaattggtat atgattgaga atggagaaca gattgagttt cctttgaaac
     551  caattgttga gaatgcaaag ccaacacttc gacagatcat ggcacatttt
     601  agtgatttgg ctgaagcgta tattgagaag cgcaatgcga agaaagcgta
     651  catgccaggt tatggattaa agcggaacct caacgactac tcactagcac
     701  gctatgcttt tgacttcttt gagattacgt cgaagactcc agtacgcgca
     751  cgtgaggcac acatgcagat gaaagcagca cctttacgga acaccagaac
     801  tcgtcttttc ggtttagatg gttctgtcag caacaatgag gagaacacag
     851  agcggcacac aagtgatgac gtgagcagag acatgcactc tcttcttgga
     901  gtgcgcaata tctagatatt tatataagta aggtttgcta aacttatata
     951  agtattgcat agtattagtg tggttcgtcc accttaagta agtactatgt
    1001  tcactctact ggtgattcag agtggctgtg ccatctataa tttccaatag
    1051  agggac