Sequence of DPV Yam mild mosaic virus

Yam mild mosaic virus isolate Br2 polyprotein gene, partial cds.

ACC No: AF548498

Dated: 2003-10-24 | Length: 1056 | CRC: 60883695

                !!NA_SEQUENCE 1.0
ID   AF548498   standard; genomic RNA; VRL; 1056 BP.
XX
AC   AF548498;
XX
SV   AF548498.1
XX
DT   24-OCT-2003 (Rel. 77, Created)
DT   24-OCT-2003 (Rel. 77, Last updated, Version 1)
XX
DE   Yam mild mosaic virus isolate Br2 polyprotein gene, partial cds.
XX
KW   .
XX
OS   Yam mild mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1056
RA   Bousalem M., Dallot S., Fuji S., Natsuaki K.T.;
RT   "Origin, World-wide Dispersion, Bio-geographical Diversification, Radiation
RT   and Recombination: An Evolutionary History of Yam Mild Mosaic Virus
RT   (YMMV)";
RL   Unpublished.
XX
RN   [2]
RP   1-1056
RA   Bousalem M., Dallot S., Fuji S., Natsuaki K.T.;
RT   ;
RL   Submitted (27-SEP-2002) to the EMBL/GenBank/DDBJ databases.
RL   INRA-CRAG-URPV, INRA, Domaine Duclos, Prise d'eau, Petit Bourg 9717O,
RL   Guadeloupe
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1056
FT                   /country="Brazil"
FT                   /db_xref="taxon:87097"
FT                   /mol_type="genomic RNA"
FT                   /virion
FT                   /organism="Yam mild mosaic virus"
FT                   /isolate="Br2"
FT                   /specific_host="Dioscorea alata"
FT   CDS             <1. .915
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /protein_id="AAQ12308.1"
FT                   /translation="LRRLYLGDDDNDAELYNRYLKALIDNYNHDESDAVVHQASKEQTF
FT                   DAGQFASKQPQTQGPTSSSEGPGRDVNVGTKGTFSIPRIKTPMSKLTLPKLKGKVLVNL
FT                   EHLVEYEPEQVDISNKRASQEQLGQWVEAVKTSYDVDDEQLKIILNGFMVWCIENGTSQ
FT                   NINGNWYMIENGEQIEFPLKPIVENAKPTLRQIMAHFSDLAEAYIEKRNAKKAYMPGYG
FT                   LKRNLNDYSLARYAFDFFEITSKTPVRAREAHMQMKAAPLRNTRTRLFGLDGSVGTSDE
FT                   NTERHTSDDVNRDMHSLLGVRNI"
FT   mat_peptide     <1. .114
FT                   /product="NIb"
FT   mat_peptide     115. .912
FT                   /product="CP"
XX
SQ   Sequence 1056 BP; 354 A; 194 C; 246 G; 262 T; 0 other;

AF548498  Length: 1056  November 11, 2003 09:09  Type: N  Check: 5795  ..

       1  cttcgaagat tgtatctagg ggatgatgac aacgacgcag agctgtacaa
      51  tagatatctg aaagcactca ttgataacta taatcatgat gaatctgatg
     101  ccgtcgtcca ccaagcaagt aaggaacaga catttgacgc cggacagttt
     151  gcaagtaagc agccacaaac acaagggcca acaagtagct ctgaaggacc
     201  aggaagagac gttaatgttg gaacaaaggg gacattcagt attccgcgca
     251  ttaaaacacc aatgagtaaa ttgacattgc caaaactcaa aggaaaagtt
     301  ttagtaaatc tagaacattt agttgagtat gagccagagc aagtcgacat
     351  ttcaaacaag agagcttctc aggagcaact cggtcaatgg gtggaggcag
     401  tcaaaacctc gtatgatgtg gatgatgagc aactgaaaat cattttgaat
     451  ggattcatgg tatggtgtat tgaaaacgga acctctcaaa acatcaacgg
     501  gaattggtac atgattgaaa atggagagca gatagagttt cctttgaaac
     551  caattgttga aaatgcaaag ccgacgctcc gacagatcat ggcacatttc
     601  agtgatttgg ctgaagcgta tatcgagaag cgcaatgcga agaaagcgta
     651  catgccaggt tatggattga agcgaaatct caatgattat tcactagcac
     701  gctatgcctt tgatttcttc gagattacat cgaaaactcc agtacgtgca
     751  cgtgaggcac acatgcaaat gaaagcagca cctttgcgaa acacaagaac
     801  ccgtcttttt ggtttggatg gttccgttgg tacaagtgat gagaacacag
     851  agagacacac aagtgatgat gtcaacaggg acatgcactc tctccttgga
     901  gtgcgcaata tctagatatt tatataagta aatgtttggt aagcttatat
     951  aagtattaca tagtattagt gtggtttaac catcgaaata agtactatgt
    1001  tcgctctact ggaggttcag tgtggctgtg ccatcaaaaa ctttcaatag
    1051  agggac