Sequence of DPV Yam mild mosaic virus

Yam mild mosaic virus isolate Guad 2 polyprotein gene, partial cds.

ACC No: AF548501

Dated: 2003-10-24 | Length: 1056 | CRC: 1692215396

                !!NA_SEQUENCE 1.0
ID   AF548501   standard; genomic RNA; VRL; 1056 BP.
XX
AC   AF548501;
XX
SV   AF548501.1
XX
DT   24-OCT-2003 (Rel. 77, Created)
DT   24-OCT-2003 (Rel. 77, Last updated, Version 1)
XX
DE   Yam mild mosaic virus isolate Guad 2 polyprotein gene, partial cds.
XX
KW   .
XX
OS   Yam mild mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1056
RA   Bousalem M., Dallot S., Fuji S., Natsuaki K.T.;
RT   "Origin, World-wide Dispersion, Bio-geographical Diversification, Radiation
RT   and Recombination: An Evolutionary History of Yam Mild Mosaic Virus
RT   (YMMV)";
RL   Unpublished.
XX
RN   [2]
RP   1-1056
RA   Bousalem M., Dallot S., Fuji S., Natsuaki K.T.;
RT   ;
RL   Submitted (27-SEP-2002) to the EMBL/GenBank/DDBJ databases.
RL   INRA-CRAG-URPV, INRA, Domaine Duclos, Prise d'eau, Petit Bourg 9717O,
RL   Guadeloupe
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1056
FT                   /country="Guadeloupe"
FT                   /db_xref="taxon:87097"
FT                   /mol_type="genomic RNA"
FT                   /virion
FT                   /organism="Yam mild mosaic virus"
FT                   /isolate="Guad 2"
FT                   /specific_host="Dioscorea alata"
FT   CDS             <1. .915
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /protein_id="AAQ12311.1"
FT                   /translation="LRRLYLGDDDSDTELYNRYLRALIDNYNHDESDIVIHQASKEQTF
FT                   DAGQFASKQSQPQGPASSSEGPGKDVNVGTKGTFSIPRIKAPMSKLTLPKLKGKVLVNL
FT                   EHLVEYEPEQVDISNKRASQEQLGQWVEAVKTSYDVDDEQLKIILNGFMVWCIENGTSP
FT                   NINGNWYMIENGEQIEFPLKPIVENAKPTLRQIMAHFSDLAEAYIEKRNAKKAYMPGYG
FT                   LKRNLNDYSLARYAFDFFEITSKTPVRAREAHMQMKAAALRNTRTRLFGLDGSVSNNEE
FT                   NTERHTSDDVSKDMHSLLGVRNI"
FT   mat_peptide     <1. .114
FT                   /product="NIb"
FT   mat_peptide     115. .912
FT                   /product="CP"
XX
SQ   Sequence 1056 BP; 347 A; 199 C; 249 G; 261 T; 0 other;

AF548501  Length: 1056  November 11, 2003 09:09  Type: N  Check: 8329  ..

       1  ctacgaagac tgtatctagg agatgatgac agtgatacag agttgtacaa
      51  caggtatctg agagcgctca tagataacta caatcatgat gaatctgata
     101  tcgttatcca ccaagcaagt aaggagcaaa catttgatgc cggacagttc
     151  gcaagcaagc aatcacaacc acaaggacca gcaagtagtt ctgaaggacc
     201  aggaaaggac gtcaatgttg gaacaaaggg gacattcagc attcctcgca
     251  tcaaagcacc aatgagcaaa ttgacgttac caaaactgaa aggaaaagtt
     301  ttagtaaatc tagaacattt ggtcgagtac gaaccggagc aagtcgacat
     351  ttcaaacaag agagcttctc aggagcaact tggtcaatgg gtggaggcag
     401  tcaaaacttc atatgatgtg gatgatgaac aactgaaaat tattttgaat
     451  gggttcatgg tgtggtgcat tgaaaacgga acttctccaa acattaatgg
     501  gaattggtat atgattgaga atggagaaca gattgagttt cctttgaaac
     551  caattgttga gaacgcaaag ccaacacttc gacagatcat ggcacatttt
     601  agtgatttgg ctgaagcgta tattgagaag cgcaacgcga agaaagcgta
     651  catgccaggt tatggattaa agcggaacct caacgactac tcactagcac
     701  gctatgcttt tgacttcttt gagattacgt cgaagactcc agtacgcgca
     751  cgtgaggcac acatgcaaat gaaagcagca gctctacgga acaccagaac
     801  tcgtcttttc ggtttagatg gttctgtcag caacaatgag gagaacacgg
     851  agcggcacac aagtgatgac gtgagcaaag acatgcactc tcttcttgga
     901  gtgcgcaata tctagatatt tatataagta aggtttgcta aacttatata
     951  agtattgcat agtattagtg tggttcgtcc accttaagta agtactatgt
    1001  tcactctact ggtgattcag agtggctgtg ccatctataa tttccaatag
    1051  agggag