Sequence of DPV Yam mild mosaic virus

Yam mild mosaic virus isolate FIJI 2 polyprotein gene, partial cds.

ACC No: AF548516

Dated: 2003-10-24 | Length: 964 | CRC: 907634533

                !!NA_SEQUENCE 1.0
ID   AF548516   standard; genomic RNA; VRL; 964 BP.
XX
AC   AF548516;
XX
SV   AF548516.1
XX
DT   24-OCT-2003 (Rel. 77, Created)
DT   24-OCT-2003 (Rel. 77, Last updated, Version 1)
XX
DE   Yam mild mosaic virus isolate FIJI 2 polyprotein gene, partial cds.
XX
KW   .
XX
OS   Yam mild mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-964
RA   Bousalem M., Dallot S., Fuji S., Natsuaki K.T.;
RT   "Origin, World-wide Dispersion, Bio-geographical Diversification, Radiation
RT   and Recombination: An Evolutionary History of Yam Mild Mosaic Virus
RT   (YMMV)";
RL   Unpublished.
XX
RN   [2]
RP   1-964
RA   Bousalem M., Dallot S., Fuji S., Natsuaki K.T.;
RT   ;
RL   Submitted (27-SEP-2002) to the EMBL/GenBank/DDBJ databases.
RL   INRA-CRAG-URPV, INRA, Domaine Duclos, Prise d'eau, Petit Bourg 9717O,
RL   Guadeloupe
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .964
FT                   /country="Fiji"
FT                   /db_xref="taxon:87097"
FT                   /mol_type="genomic RNA"
FT                   /virion
FT                   /organism="Yam mild mosaic virus"
FT                   /isolate="FIJI 2"
FT                   /specific_host="Dioscorea alata"
FT   CDS             <1. .915
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /protein_id="AAQ12326.1"
FT                   /translation="LRRLYLGDDDSDTELYNRYLRALIDNYNHDESDIVVHQASKEQTF
FT                   DAGQFASKQSQPQRPASSSEGPGKDVNVGTKGTFSIPRIKAPMSKLTLPKLKGKVLVNL
FT                   EHLVEYEPEQVDISNKRASQEQLGQWVEAVKTSYDVDDEQLKIILNGFMVWCIENGTSP
FT                   NINGNWYMIENGEQIEFPLKPIVENAKPTLRQIMAHFSDLAEAYIEKRNAKKAYMPGYG
FT                   LKRNLNDYSLARYAFDFFEITSKTPVRAREAHMQMKAAALRNTRTRLFGLDGSVSNNEE
FT                   NTERHTSDDVSRDMHSLLGVRNI"
FT   mat_peptide     <1. .114
FT                   /product="NIb"
FT   mat_peptide     115. .912
FT                   /product="CP"
XX
SQ   Sequence 964 BP; 325 A; 177 C; 227 G; 235 T; 0 other;

AF548516  Length: 964  November 11, 2003 09:09  Type: N  Check: 5722  ..

       1  ctacgaagac tgtatctagg agatgatgac agtgatacag agttgtacaa
      51  caggtatctg agagcgctca tagacaacta caatcatgat gaatctgata
     101  tcgttgtcca tcaagcaagt aaggagcaaa catttgatgc cggacagttt
     151  gcaagcaagc aatcacaacc acaaagacca gcaagtagtt ctgaaggacc
     201  agggaaggac gtcaatgttg gaacaaaggg gacattcagc attcctcgca
     251  tcaaagcacc aatgagcaaa ttgacgttac caaaactgaa aggaaaagtt
     301  ttagtaaatc tagaacattt ggttgagtac gaaccggagc aagttgacat
     351  ttcaaacaag agagcttctc aggaacagct tggtcaatgg gtggaggcag
     401  ttaaaacttc atatgatgtg gatgatgaac aactgaaaat tattttgaat
     451  ggattcatgg tgtggtgcat tgaaaacgga acttctccaa acattaatgg
     501  gaattggtat atgattgaga atggagaaca gattgagttt cctttgaaac
     551  caattgttga gaatgcaaag ccaacacttc gacagatcat ggcacacttt
     601  agtgatttgg ctgaagcgta tattgagaag cgcaatgcga agaaagcgta
     651  catgccaggt tatggattaa agcggaacct caacgactac tcactagcac
     701  gctatgcttt tgacttcttt gagattacgt cgaagactcc agtacgcgca
     751  cgtgaggcac acatgcaaat gaaagcagca gctctacgga acaccagaac
     801  tcgtcttttc ggtttagatg gttctgtcag caacaatgag gagaacacag
     851  agcggcacac aagtgatgac gtgagcagag acatgcactc tcttcttgga
     901  gtgcgcaata tctagatatt tatataagta aggtttgcta aacttatata
     951  agtattgcat agta