Sequence of DPV Yam mild mosaic virus

Yam mild mosaic virus isolate JPN 2 polyprotein gene, partial cds.

ACC No: AF548520

Dated: 2003-10-24 | Length: 1017 | CRC: -747707221

                !!NA_SEQUENCE 1.0
ID   AF548520   standard; genomic RNA; VRL; 1017 BP.
XX
AC   AF548520;
XX
SV   AF548520.1
XX
DT   24-OCT-2003 (Rel. 77, Created)
DT   24-OCT-2003 (Rel. 77, Last updated, Version 1)
XX
DE   Yam mild mosaic virus isolate JPN 2 polyprotein gene, partial cds.
XX
KW   .
XX
OS   Yam mild mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1017
RA   Bousalem M., Dallot S., Fuji S., Natsuaki K.T.;
RT   "Origin, World-wide Dispersion, Bio-geographical Diversification, Radiation
RT   and Recombination: An Evolutionary History of Yam Mild Mosaic Virus
RT   (YMMV)";
RL   Unpublished.
XX
RN   [2]
RP   1-1017
RA   Bousalem M., Dallot S., Fuji S., Natsuaki K.T.;
RT   ;
RL   Submitted (27-SEP-2002) to the EMBL/GenBank/DDBJ databases.
RL   INRA-CRAG-URPV, INRA, Domaine Duclos, Prise d'eau, Petit Bourg 9717O,
RL   Guadeloupe
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1017
FT                   /country="Japan"
FT                   /db_xref="taxon:87097"
FT                   /mol_type="genomic RNA"
FT                   /virion
FT                   /organism="Yam mild mosaic virus"
FT                   /isolate="JPN 2"
FT                   /specific_host="Dioscorea alata"
FT   CDS             <1. .915
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /protein_id="AAQ12330.1"
FT                   /translation="LRRLYLGDDDDDAELYNRYLRALIDNYTHDDSDVVVHQASKEQTF
FT                   DAGQFASKQAQPQGTTNSSEGPGRDVNVGTKGTFSIPRIKAPMSKLTLPRLKGKVLVNL
FT                   EHLVEYEPEQVDISNKRASQEQLGQWVEAVKTSYDVDDEQLKIILNGFMVWCIENGTSP
FT                   NINGNWYMIENGEQIEFPLKPIVENAKPTLRQIMAHFSDLAEAYIEKRNAKKAYMPGYG
FT                   LKRNLNDYSLARYAFDFFEITSKTPVRAREAHMQMKAAALRNTRTRLFGLDGSVGANDE
FT                   NTERHTSDDVNRDMHSLLGVRNI"
FT   mat_peptide     <1. .114
FT                   /product="NIb"
FT   mat_peptide     115. .912
FT                   /product="CP"
FT   3'UTR           916. .>1017
XX
SQ   Sequence 1017 BP; 339 A; 197 C; 235 G; 246 T; 0 other;

AF548520  Length: 1017  November 11, 2003 09:09  Type: N  Check: 7716  ..

       1  cttcgaaggc tatacttagg agatgatgat gatgatgcag agctatataa
      51  cagataccta agggcgctca tagacaacta cactcatgat gattctgatg
     101  tcgtcgtcca ccaagcaagt aaggagcaaa catttgacgc tggacaattt
     151  gcaagtaagc aggcacaacc acaagggaca acgaatagct ctgaaggacc
     201  aggaagagac gttaatgttg ggacgaaagg aacattcagc atccctcgca
     251  tcaaagcacc aatgagtaaa ctgacgctac caagactcaa aggaaaagtc
     301  ctagtaaacc tggaacatct agttgagtac gaaccggagc aggttgacat
     351  ttcaaataaa cgagcatctc aagaacaact tggtcagtgg gtggaagcag
     401  tcaaaacttc atatgatgta gatgatgagc agttgaagat tattttgaat
     451  ggatttatgg tttggtgcat tgagaatgga acttcaccaa atatcaatgg
     501  aaattggtat atgattgaga atggggaaca gatagaattt ccattgaaac
     551  caattgtcga aaatgcaaag ccaacactcc gacagattat ggcccacttc
     601  agcgacttgg ctgaggcgta cattgaaaag cgcaatgcaa agaaagcata
     651  catgccaggt tatggattaa agcggaacct caacgactat tcattagcac
     701  gttatgcttt tgacttcttt gaaatcacat caaaaactcc agtgcgcgca
     751  cgtgaggcac acatgcaaat gaaggcagcg gccctgcgga acactagaac
     801  tcgtctcttc ggtttggatg gttctgttgg cgccaatgat gagaatacag
     851  aaagacatac gagtgatgat gtgaacagag acatgcactc gcttcttgga
     901  gtgcgcaata tctaaatatt tatataagta ggcatccagt aaacttatat
     951  aagtattgca tagtatttta gcgtggttcg tccaccatag ataagtacta
    1001  tgttcactct actggtg