Sequence of DPV Cotton leaf curl Alabad virus
Cotton leaf curl Alabad virus-[802a] Pakistan strain segment A, complete sequence
ACC No: AJ002455
Dated: 2005-04-15 | Length: 2744 | CRC: -1374364620
!!NA_SEQUENCE 1.0
ID CLCVAJ455 standard; circular genomic DNA; VRL; 2744 BP.
XX
AC AJ002455;
XX
SV AJ002455.1
XX
DT 31-MAR-1998 (Rel. 55, Created)
DT 15-APR-2005 (Rel. 83, Last updated, Version 6)
XX
DE Cotton leaf curl Alabad virus-[802a] Pakistan strain segment A, complete
DE sequence
XX
KW AC2 gene; AC3 gene; AC4 gene; AV2 gene; coat protein; rep gene.
XX
OS Cotton leaf curl Alabad virus-[802a]
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
XX
RN [2]
RP 1-2744
RA Robinson D.J.;
RT ;
RL Submitted (23-OCT-1997) to the EMBL/GenBank/DDBJ databases.
RL Robinson D. J., Scottish Crop Research Institute, Virology, Invergowrie,
RL Dundee, Scotland, U.K., DD2 5DA
XX
RN [3]
RX MEDLINE; 98227943.
RX PUBMED; 9568988.
RA Zhou X., Liu Y., Robinson D.J., Harrison B.D.;
RT "Four DNA-A variants among Pakistani isolates of cotton leaf curl virus and
RT their affinities to DNA-A of geminivirus isolates from okra";
RL J. Gen. Virol. 79:915-923(1998).
XX
FH Key Location/Qualifiers
FH
FT source 1. .2744
FT /db_xref="taxon:222457"
FT /mol_type="genomic DNA"
FT /organism="Cotton leaf curl Alabad virus-[802a]"
FT /strain="Pakistan"
FT /isolate="clc802a"
FT /segment="A"
FT CDS 281. .1051
FT /db_xref="GOA:Q77CF1"
FT /db_xref="InterPro:IPR000263"
FT /db_xref="InterPro:IPR000650"
FT /db_xref="UniProt/TrEMBL:Q77CF1"
FT /product="coat protein"
FT /gene="AV1"
FT /protein_id="CAA05456.1"
FT /translation="MSKRAADIVISTPASKVRRRLNFGSPYTSRAAAPIVRVTKQQAWT
FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVVHIGKVMCISDVTRGVGLTHR
FT IGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEP
FT STATVKNMHRDRYQVLRKWHATVTGGQYASKEQALVKKFVRVNNYVVYNQQEAGKYENH
FT TENALMLYMACTHASNPVYATLKIRIYFYDSVTN"
FT CDS 121. .486
FT /db_xref="InterPro:IPR002511"
FT /db_xref="InterPro:IPR005159"
FT /db_xref="UniProt/TrEMBL:Q77CF0"
FT /gene="AV2"
FT /protein_id="CAA05457.1"
FT /translation="MWDPLVNEFPDTVHGFRCMLSVKYLQLLSQDYSPDTLGYELIRDL
FT ICILRSRNYVEASCRYRHFYARVESTPASELRQPIHQPCCCPHCPRHKTTGMDKQAYEQ
FT ETQNVPDVQKSGCSKGM"
FT CDS complement(1500. .2591)
FT /db_xref="GOA:O73577"
FT /db_xref="HSSP:1L5I"
FT /db_xref="InterPro:IPR001191"
FT /db_xref="InterPro:IPR001301"
FT /db_xref="UniProt/TrEMBL:O73577"
FT /gene="AC1"
FT /protein_id="CAA05458.1"
FT /translation="MPRNNSFCINAKNIFLTFPKCPIPKEQMLDILSNISCPSDKLFIR
FT VAQEKHQDGSLHIHALIQFKGKAKFRNPRHFDVTHPHTSTQFHPNFQGAKSSSDVKSYI
FT EKDGDYIDWGTFQIDGRSARGGQQTANDAAAEALNAGSKEAAMAIIREKLPEKFIFQYH
FT NLNSNLDRIFTPPLEVYVSPFLSSSFNQVPEELEEWVSENVMDAAARPLRPQSIVIEGD
FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHFLKHFKEFMGAQRDW
FT QSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEYLDEEKNQALKNWAVKNAVFITLEEPL
FT YSIAHQSPAQGGQEEDQEEESGS"
FT CDS complement(1151. .1603)
FT /db_xref="GOA:O72716"
FT /db_xref="InterPro:IPR000942"
FT /db_xref="UniProt/TrEMBL:O72716"
FT /gene="AC2"
FT /protein_id="CAA05459.1"
FT /translation="MQSSSPSRNHCTQLPIKVQHREAKRRTRRRRVDLECGCSYYLSIN
FT CHNHGFSHRGTHHCSSFNEWRLYLGGSKSPLFQNPQPRQPSIHDEHGHHNNEDPIQLQP
FT SESSGSAQVFSNLPNLDDLIPSDWSFLKGIQNPSTQVSQQSRCNLT"
FT CDS complement(1054. .1458)
FT /db_xref="InterPro:IPR000657"
FT /db_xref="UniProt/TrEMBL:O72717"
FT /gene="AC3"
FT /protein_id="CAA05460.1"
FT /translation="MDSRTGERITAAHSTNGVFIWEVPNPLYFKILSHDNRPFTTNMDI
FT ITMRIQFNYNLRKALGVHKCFLTFRIWTTLYPPTGLFLRVFKTQVLKYLNNLGVISLNL
FT VIKAVEHVLYNVINQTMYVDQYSDIKFKLY"
FT CDS complement(2177. .2434)
FT /db_xref="InterPro:IPR002488"
FT /db_xref="UniProt/TrEMBL:O73569"
FT /gene="AC4"
FT /protein_id="CAA05461.1"
FT /translation="MGLCISMHSSNSKVKPSSETPDISMSLTLIPPPNSIQTSRELSPA
FT LMLSPTSRRTEITSTGAHFRSMEDLQEEVNRQLMMLLQKP"
XX
SQ Sequence 2744 BP; 740 A; 544 C; 629 G; 831 T; 0 other;
AJ002455 Length: 2744 April 19, 2005 08:53 Type: N Check: 1640 ..
1 accggatggc cgcgcgattt tttttagtgg tgggtccaga acgcacgacg
51 atgcagactc aaagcttaga taacgctcct tcggctataa gtacttgcgc
101 actaagtttc aaattgaaac atgtgggatc cactagtaaa cgaattcccg
151 gatacggtgc acgggtttcg ttgtatgctt tctgtcaaat atttgcaact
201 tttgtcgcag gattattctc cagataccct tggttacgag ttaatacgtg
251 atttaatctg tattctacgc tcccgtaatt atgtcgaagc gagctgccga
301 tatcgtcatt tctacgcccg cgtcgaaagt acgccggcgt ctgaacttcg
351 gcagcccata caccagccgt gctgctgccc ccattgtccg cgtcacaaaa
401 caacaggcat ggacaaacag gcctatgaac aggaaaccca gaatgtaccg
451 gatgtacaga agtccggatg ttccaagggg atgtgagggt ccctgtaagg
501 tacagtcgtt tgaatctcga cacgatgtcg ttcatattgg taaggtaatg
551 tgtatttcgg atgttacgcg tggagtcggt ttgacccatc gtataggtaa
601 gcgtttttgt gtcaagtcag tttatgtttt aggtaagata tggatggacg
651 agaacatcaa gaccaagaac catacgaatt cggtgatgtt tttccttgtt
701 cgtgatcgac gaccggtaga taaaccacaa gattttggtg aagtatttaa
751 tatgtttgat aacgagccca gtacggcgac cgtgaagaac atgcataggg
801 atcggtacca ggtgttgagg aaatggcatg caaccgttac tggtggtcaa
851 tatgcgagta aggagcaggc attggtcaag aagtttgtta gggttaacaa
901 ctacgttgtt tacaaccagc aggaagcagg aaaatacgag aatcacaccg
951 agaatgcatt gatgctttat atggcttgta cccatgctag taacccagtt
1001 tatgctacgc ttaagattag aatatatttt tatgactctg taacgaacta
1051 atattaataa agtttgaatt ttatatctga atattggtct acatacattg
1101 tttgattaat tacattgtac aatacatgtt caacggcttt aataactaaa
1151 ttaagtgaga ttacacctag attgttgaga tacttgagta cttgggtttt
1201 gaataccctt aagaaaagac cagtcggagg gtataaggtc gtccagattc
1251 ggaaggttag aaaacacttg tgcactccca gagctttccg aaggttgtag
1301 ttgaattgga tcctcattgt tatgatgtcc atgttcgtcg tgaatggacg
1351 gttgtcgtgg ctgaggattt tgaaataaag gggatttgga acctcccaga
1401 taaagacgcc attcgttgaa tgagctgcag tgatgcgttc ccctgtgcga
1451 gaatccatgg ttgtggcagt tgatacttag gtaatagctg catccacatt
1501 caagatccac tctcctcctc ctggtcctcc tcttggcctc cctgtgctgg
1551 actttgatgg gcaattgagt acagtggttc ctcgagggtg atgaagactg
1601 cattcttaac tgcccagttt tttagggctt ggttcttttc ctcgtccaga
1651 tattctttat aagatgagtt tggcccagga ttgcagagga agattgtggg
1701 tattccacct ttaatttgaa ctggcttccc gtactttgtg tttgattgcc
1751 agtccctttg ggcccccatg aactctttaa agtgcttgag gaagtgcgga
1801 tcgacatcat caatgacgtt ataccacgca tcattgctgt aaactttggg
1851 gcttaaatct aaatgaccgc ataagtaatt atgaggccct aatgacctag
1901 cccacatcgt tttacccgta cgactgtctc cctcaatcac tatactttga
1951 ggcctcagag gccgcgcagc ggcatccatg acattctcgg agacccactc
2001 ttcaagttct tcaggaactt gattaaaaga agaagataaa aaaggagaaa
2051 cataaacctc caacggagga gtgaaaatcc tatctaaatt actatttaaa
2101 ttatgatatt gaaaaataaa tttttctggg agtttttccc ttattatagc
2151 catagctgct tctttagaac ctgcatttag ggcttctgca gcagcatcat
2201 tagctgtctg ttgacctcct cttgcagatc ttccatcgat ctgaaatgtg
2251 ccccagtcga tgtaatctcc gtccttctcg atgtaggact taacatcaga
2301 gctggactta gctccctgga agtttggatg gaattgggtg gaggtatgag
2351 ggtgagtgac atcgaaatgt ctggggtttc tgaacttggc tttacctttg
2401 aattggatga gtgcatggat atgcagagac ccatcttggt gtttttcttg
2451 tgcaacccta atgaataatt tgtctgaagg gcatgaaatg ttagataata
2501 tatctaacat ctgttctttt ggaattgggc attttgggaa agtaagaaaa
2551 atattttttg catttatgca aaaagaatta tttctgggca tttttgctat
2601 cggggacact taaaactcat atcaattggg gacactgggg actcatttat
2651 actgcgtccc taaatggcat aaatgtaaat atttgccttt atgtttgaat
2701 ttcaaattcc aaacgctcca aaaagcggcc atccgtataa tatt