Sequence of DPV Phaseolus vulgaris Tpv2-6 virus
Phaseolus vulgaris DNA for retrotransposon Tpv2-6 plus flanking host DNA
ACC No: AJ005762
Dated: 1999-05-04 | Length: 5846 | CRC: -1496757725
!!NA_SEQUENCE 1.0
ID PVA005762 standard; genomic DNA; PLN; 5846 BP.
XX
AC AJ005762;
XX
SV AJ005762.1
XX
DT 04-MAY-1999 (Rel. 59, Created)
DT 04-MAY-1999 (Rel. 59, Last updated, Version 1)
XX
DE Phaseolus vulgaris DNA for retrotransposon Tpv2-6 plus flanking host DNA
XX
KW retrotransposon; Tpv2-6.
XX
OS Phaseolus vulgaris
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliophyta; eudicotyledons; core eudicots; rosids;
OC eurosids I; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus.
XX
RN [1]
RP 1-5846
RA Bachmair A.;
RT ;
RL Submitted (01-MAY-1998) to the EMBL/GenBank/DDBJ databases.
RL Bachmair A., Institute of Botany, University of Vienna, Rennweg 14, Vienna,
RL A-1030, AUSTRIA.
XX
RN [3]
RX DOI; 10.1023/A:1006132532684.
RX MEDLINE; 99277596.
RX PUBMED; 10350093.
RA Garber K., Bilic I., Pusch O., Tohme J., Bachmair A., Schweizer D.,
RA Jantsch V.;
RT "The Tpv2 family of retrotransposons of Phaseolus vulgaris: structure,
RT integration site characterisation, and use for genotype classification";
RL Plant Mol. Biol. 39(4):797-807(1999).
XX
FH Key Location/Qualifiers
FH
FT source 1. .5846
FT /db_xref="taxon:3885"
FT /mol_type="genomic DNA"
FT /organism="Phaseolus vulgaris"
FT /cultivar="Saxa"
FT LTR 501. .797
FT /note="5' LTR"
FT LTR 4879. .5157
FT /note="3' LTR"
FT CDS 816. .4862
FT /note="gag-pol fusion protein"
FT /pseudo
FT /gene="Tpv2-6"
FT variation 2802
FT /note="putative in active protein"
FT /replace="c"
XX
SQ Sequence 5846 BP; 1959 A; 990 C; 1382 G; 1515 T; 0 other;
AJ005762 Length: 5846 May 9, 2005 17:26 Type: N Check: 2272 ..
1 gatctagata tttgttcaga agtttaaacc tcgtatacgt tctacccctt
51 agtcatatct accttaaaga gacatcacat ttttgcaata gtttttgaaa
101 gaccaagtta aagttgctca accgtctatg cagattatgc ataagacagt
151 ctacaaagtt tcttcggact gtatgtgtcc acacctttta tagcgttgaa
201 tttgaagaag ctgaaagtta ttcgggaacc ctaaattaca ctctctattc
251 aaccttccaa ggttgatctc tctgtaaagg cttatagttg ggccaatgcc
301 tttgctaaaa aataaggctt caagagaact cttacagaag gcgaaaatat
351 tcaaacatca aaagagaaga cgtacaagga ttccaactta gcgtcctcat
401 ccagattatt tcataaagaa tgtctagatc agcacaaatc ttcttacgac
451 ctacccaatg atgtcaccac attcttttta caagaaccag actttgaatt
501 tgttgaataa actttaatgt aatttgtggg ttttaaagtt agaagttact
551 agaaaagagt agaatgggag tttggatatg taaaaggtca aaagttggga
601 gtgggatttt aattatgttg ttagtggggt tttaaggcca taatgaagat
651 ttttctagaa ggcttcctaa agcctataaa aatgatgctc tctcaattgt
701 aatatgcacc acagaaagaa atacaataga gagaaattca aagaagagtg
751 ttttcaatag agagaaaatt caagtgtgag tgattgcttg ttttacaatt
801 tggtatcaag agccaatggt gaatgtgatg ggtcaaatac cgctaccacg
851 attatcgaag gcaaccacat atgataattg gagcattcaa atgaaagctc
901 ttttcggttc tcaagataca tgggaggtgg tcgaagaagg tttcgaagaa
951 ccaacaaata ccatgggtta tacggcagct caaaccaagg tgttgaaaga
1001 gatgcgatca aaggataagg cagcactata catgttgttc cgagcggttg
1051 atgagtcggg ctttgagaag attgccagtg caactacttc aaaagaagcg
1101 tgggacatct taaaaaaggt gttcaaagga ttcgaccgag ttaagcaagt
1151 gcgtctacaa actcttcgtg gcgagttgga gagcatgaag atggagtcgg
1201 aaagtgtatc tgactatatt acgcgtgtac agactgtggt gaatcaactt
1251 aaccgaaatg gtgaaaagtt gaccgatgca cgagttgtgg agaagatttt
1301 gagaacatta accgataatt ttgagagtat tgtgtgcgta atagaagagt
1351 caaagaacct aacgacactc ataatcgaca agcttgccgg ttctctcgag
1401 gcacacgagc aacgaaagaa gaagaagaag gaggaaacac tcgagcaagc
1451 acttcaaacc aaggcgttaa tcaaagacga aaagttactc tatcatcaaa
1501 attctcaata tagagggcgt ggtcgtggaa gtcgtggaaa cagtcgtggt
1551 ggaaaaggta gcaaccatga agggtattat aaggaaaagg aacagtcgag
1601 ccaaccaaat tggcgtggaa gaggacgtgg tagaggaaga ggcggccgat
1651 cgaattattc caacatcgag tgctacaaat gccacaaata tggtcactat
1701 gcgaaggatt gtaactctga caaatgttac aattgtggta aagtggggca
1751 ttttgcaaaa gattgtcgtg ttgatataaa gatagaagaa acaaccaacc
1801 tagccttgga agtcgaaacg aatgaaggtg ttctcttgat ggctcaagat
1851 gaagtcaaaa ttaacagtta cactctgtgg tacctcgact caggagcaag
1901 caaccatatg tgcggtcacg agtacctatt caaagatatg caaaagattg
1951 aagatggtca tgtgtcattt ggagatgcat caaaggtgga ggtcaaaggg
2001 cgaggtacag tttgctactt acaaaaggat ggcttaattg ggtcactcca
2051 aaatgtttat tacgtatcag acctcaagac caacatattg agtatggggc
2101 aactcacgga gaaaggttac tcgatttttc tgaaagatcg gctactacac
2151 ttgaagaaca agcaagggcg tttggttgct caaatcgaga tggcaagaaa
2201 tcggatgtac atgctgaatt tgagaagcat acaagaaaaa tgtttgcaag
2251 tcaacataga agacaaggca tcattgtggc atcttcgttt tggtcaccta
2301 catcatggtg gactaaaaga gttagcgaag aagaatatgg tgcacgggct
2351 acccaacatg gactacgagg gaaaattttg tgaagaatgt gtgctcagca
2401 agcatatgag aacctcgttt ccaaagaagg ctcaatattg ggctaagcaa
2451 cctctcgaat tgattcatac cgacatatgt ggaccaatta ctccagaatc
2501 cttcggcggt aaaaggtatt ttgttacctt tatcgatgat ttctcacgaa
2551 agacttgggt ttattttctg aaggaaaaat ccgaggcatt tgaggtgttg
2601 aaaaagttca aggtgatggt ggaaagggca actgatagac agatcaaagt
2651 tgtacgatct gatagaggtg gcgagtatac ttcaacggct ttcatggagt
2701 attgcgagga gcaaggcata aggcgatttc taactgcacc atacactcct
2751 caacaaaatg gtgtggccga aaggaagaac cggaccattc tcgacatggt
2801 ttgatcaatg cttaagagca aaaagatgcc aaaggaattt tgggcggaag
2851 ctgtgcaatg cgccatttat gtgcaaaatc gatgtccaca tgtgaagtta
2901 gatgatcaaa caccacaaga ggcatggagc ggacaaaagc caacaatttc
2951 tcatctcaaa gtgtttggta gtgtggctta tgcacacgta cctgatcaac
3001 gaagaacgaa gctcgaagac aaaagcaaaa ggtatgtttt tattgggtat
3051 gatgagaaga caaaaggata caagctcctt gacccgataa gcaagaaggt
3101 aatggtgagt cgtgatgtgc gaataaatga aacaagcaag tgggattgga
3151 acaattcttc agaggttatg attgaagttc gagaatcatc aatagttgca
3201 ccgacaagta taaactccga aacaaccgat gatgaagatg aaccacgaca
3251 acctaaaatt cgaagtttgc atgatttgta tgattcgaca aatgaggtac
3301 accttgtatg tcttttggca gatgcagaaa atatcaactt tgaagaggcg
3351 gtgcgagaca agaagtggca aactgccatg gatgaggaga ttaaagcgat
3401 tgaccgcaac aacacatggg agctaacaga attgccagac ggaagtcagc
3451 ccattggtgt gaagtgggta ttcaagaaaa agatgaatgc tcaaggcgag
3501 atagagaggt acaaggcgcg actcgttgcg aagggataca aacaaaagga
3551 gggaattgac tacgatgagg tgtttgctcc cgttgtaaga atggagacaa
3601 ttcgattgct catttcccaa gcggctcaat ttaaatggcc gatatttcaa
3651 atggatgtca agtcggcatt cttgaatggt gtgcttgaag aagaagtcta
3701 catcgaacaa ccacccgggt acatgaaaat cggagaggag aagaaggtgc
3751 taaaatttaa gaaggcactt tacgggttga agcaagcatc gcaggtatgg
3801 aatactcgta tcgatacata cttcaaggag aacaggttca agcaatgtcc
3851 ttacgagcat gctctttatg caaagaacaa tggaggtaac atgatatttg
3901 ttgctattta tgttgatgat ctcattatta tgggtaacaa taatgagatg
3951 atagaagagt ttaagggcac aatgagacgg gaatttgaga tgacagattt
4001 gggattgatg aagtttttcc ttggcttaga ggttagacaa aaagagacgg
4051 gtatttttgt atcacaggag acatatgcaa aggatatttt gaagaagtac
4101 aagatggaaa attgcaaccc agtatcaata ccaatggaac caggtgcaaa
4151 actctcaaag ttcgatggag gagaacgtgt cgatgcaagt agataccgga
4201 gtttggtagg aagccttcgt tatctcacat gcacgaggcc ggatctttca
4251 ttaagtgtcg gcatcataag tcgattcatg gaggaaccgt tttactcaca
4301 ttggaaggcg ttgaagcgag tcctacggta catccaaggt actatatcac
4351 ttggattgtt ctactcaaaa gtagaagatt acaagttggt gggttactct
4401 gacagcgatt ggtgcggaga gatagatgat aggaaaagta catcgggata
4451 tgtattctat atggggaaca caacattttc atggctttca aagaagcaac
4501 cgattgtgac gctatcgacg tgtgaagctg aatatgtggc agcttcttgg
4551 tgtgtatgtc atgcgatatg gcttagaaac ttgttgacca agatggagct
4601 aaagcaacta ggtgcaaccg tggttcaagt tgacaacaaa tcagcaattg
4651 agttggcaaa ggacccagtg aaccatgaaa gaagcaaaca cattgacgtt
4701 cgttttcact ttattcgaga tcatgtgaag aaaggaagtg tggaattggt
4751 gcatgtggca agtcaggatc aagttgcaga tatcttcaca aaaccgctac
4801 cgaaagtctt tttcgacaaa ttcaagaaaa tgattggcat gatggatggt
4851 agaaacattt aagtttatgg gggagtttcg ttgaataaac tttaatgtaa
4901 tttgtgggtt ttaaagttag aagttactag aaaagagtag aatgggagtt
4951 tggatatgta aaaggtcaaa agttgggagt gggattttaa ttatgttgtt
5001 agtgaggttt taaggccata atgaagattt ttctagaaga gcttcctaaa
5051 gcctataaaa aggatgctct ctcaattgta atatgcacca cagaaagaaa
5101 tacaatagag aggaattcaa ataagagtgt tttcagtgag tgattgcttg
5151 ttttacagaa ttatggaaga agttgatcaa aattcctgaa gcagtatgtc
5201 tgattggttt ttatgatcta catacaactt ctctagacac tatccaacct
5251 tagcttgatc agaagatagt agatgtttta gaaaagaagt gtctagaagt
5301 tgagctgaaa aagaagatca tagcatattt gttggctaga caagaagagt
5351 caaagcctta acaaaagctc aaatccttac aaaggctcaa gcaaaagaag
5401 atgaagaagc caaaattgtt gcagaagctc tggtgcaaac ccatacaaaa
5451 gtagaggtgg acaacaatca tatagttttt atgcaatacg tccatcttct
5501 agctcccaaa gcaataagca aaagcctgtt gtacttgtga gtagtcaacc
5551 agcaagtatt gttgacacta cataactcat gatacaagac gccttgcatg
5601 aagactgcct tgccattgca acacaactac aggttacaga ggatcgacaa
5651 gcgcttaggc taaagcaagt tgcgtccccc tctgcttatg agatacaaag
5701 ttcctttgct caacttctca ggattgttaa tgttacctgc tgaatcggct
5751 acctcaactc aacctcctac ccaataagaa tctagtcaat aacaatcacc
5801 accttcgtct acgtcgctgc aaccataatg ttttcaaaat ttcacc