Sequence of DPV Sugarcane mosaic virus

Sugarcane mosaic virus RNA, 3'-end of genome, isolate Scmw-G952.

ACC No: AJ006200

Dated: 2003-03-04 | Length: 1820 | CRC: -1185666842

                !!NA_SEQUENCE 1.0
ID   SMVAJ6200  standard; RNA; VRL; 1820 BP.
XX
AC   AJ006200;
XX
SV   AJ006200.1
XX
DT   07-JAN-1999 (Rel. 58, Created)
DT   04-MAR-2003 (Rel. 75, Last updated, Version 2)
XX
DE   Sugarcane mosaic virus RNA, 3'-end of genome, isolate Scmw-G952.
XX
KW   coat protein; inclusion protein; polyprotein.
XX
OS   Sugarcane mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1820
RA   Kong P.;
RT   ;
RL   Submitted (14-MAY-1998) to the EMBL/GenBank/DDBJ databases.
RL   Kong P., Max-Planck-Institut fuer Zuechtungsforschung, Genetic Principles
RL   of Plant Breeding Carl-von-Linne-Weg 10, Koeln, D-50829, GERMANY.
XX
RN   [2]
RA   Kong P., Steinbss H.H., Sohn A.;
RT   "Partial sequence of Sugarcane Mosaic Potyvirus.";
RL   Unpublished.
XX
DR   GOA; Q9YJX3; Q9YJX3.
DR   SPTREMBL; Q9YJX3; Q9YJX3.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1820
FT                   /db_xref="taxon:12224"
FT                   /sequenced_mol="RNA"
FT                   /virion
FT                   /organism="Sugarcane mosaic virus"
FT                   /isolate="Scmw-G952"
FT   CDS             <1. .1548
FT                   /codon_start=1
FT                   /db_xref="GOA:Q9YJX3"
FT                   /db_xref="SPTREMBL:Q9YJX3"
FT                   /product="polyprotein"
FT                   /protein_id="CAA06908.1"
FT                   /translation="NTLMVILAFNYAMLSSGIEEDKIDNCCRMFANGDDLLLAVHPDFE
FT                   HILDGFQNHFGNLGFNFEFTSRTKDKSELWFMSTRGIKCEGIYIPKLEKERIVAILEWD
FT                   RSNLPEHRLEAIYAAMVEAWGYPDLVQEIRKFYAWLLEMQPFANLAKEGLAPYIAETAL
FT                   RNLYLGTGIKEEEIEKYFKQFAKDLPGYIEDYNEDVFHQSGSVDAGAQGGNSGSGASAS
FT                   AAGSGSGTRPPSTGSAAQGNTPPASGGSSGNNGGGQSGSNGTGGQAGSSGTGGQRDKDV
FT                   DAVSTGKISVPKLKAMSKKMRLPKAKGKDVLHLDFLLTYKPQQQDISNTRATKEEFDRW
FT                   YDAIKKEYEIDDTQMTVVMSGLMIWCIENGCSPNINGNWTMMDGDEQRVFPLKPVIENA
FT                   SPTFRQVMHHFSDAAEAYIEYRNSTERYMPRYVLQRNLTDYSLARYAFDFYEMTSRTPA
FT                   RAKEAHMQMKAAAVRGSNTRLFGLDGNVGETQENTERHTAGDVSRNMHSLLGVQQHH"
FT   mat_peptide     <1. .606
FT                   /product="NIb nuclear inclusion protein b"
FT   mat_peptide     607. .1545
FT                   /product="coat protein"
FT   3'UTR           <1549. .1820
XX
SQ   Sequence 1820 BP; 580 A; 372 C; 444 G; 424 T; 0 other;

 AJ006200  Length: 1820  March 18, 2003 10:57  Type: N  Check: 2355  ..

       1  aacacactca tggtcatact agcattcaat tacgccatgt tatcgagtgg
      51  tatcgaagaa gataaaatag acaattgctg tcgaatgttc gccaatggag
     101  acgatttatt gctggcagtg cacccggact ttgaacatat actggatgga
     151  tttcaaaacc actttggaaa tttgggcttc aattttgagt ttacatcacg
     201  aacaaaagac aaatcagaac tgtggttcat gtccacacga ggtatcaaat
     251  gtgagggcat ctatatacca aaacttgaga aagaaagaat agttgccata
     301  ctcgaatggg atcggtcaaa cctacctgag caccgtcttg aagctatata
     351  cgcagccatg gtagaagcat ggggatatcc agaccttgtt caagaaatac
     401  gaaaattcta cgcgtggctt ctcgaaatgc aaccatttgc aaatctagcg
     451  aaagagggct tagcaccata tatagcagaa accgcactca gaaatttgta
     501  cttgggcacg gggatcaagg aagaggagat tgaaaaatac tttaaacagt
     551  ttgctaaaga tctccctggc tatatagaag actataatga agatgttttc
     601  catcaatccg gttctgtgga cgcgggagcc cagggaggaa atagcggctc
     651  aggagcatcc gcatctgcag cgggtagtgg gtcaggaact agaccacctt
     701  caactggttc agcagcacag ggaaatacac ctccagcatc aggtggatca
     751  tcaggaaaca atggaggcgg tcaatcaggt tcaaacggca ctggaggtca
     801  ggcaggctca agcggaacag ggggccaaag agacaaagac gttgatgctg
     851  tttcaacagg aaaaatatca gtgccaaagc ttaaggcaat gtcgaagaaa
     901  atgcgcctgc caaaggcaaa agggaaagac gttttgcact tagatttctt
     951  gttaacatat aaaccacaac agcaagacat atcaaacact agagcaacta
    1001  aggaagagtt tgatagatgg tacgatgcca taaagaagga gtacgaaatt
    1051  gatgatacac aaatgacagt tgtcatgagt ggtctcatga tatggtgcat
    1101  cgaaaatggt tgctcaccaa acataaacgg aaattggacg atgatggacg
    1151  gagacgaaca aagggttttt ccattaaagc cagtcattga aaacgcatct
    1201  ccaactttcc gacaagtaat gcatcatttt agtgatgcag ctgaagcgta
    1251  tatagagtac cgaaactcta cagagcgata catgccaaga tacgttcttc
    1301  agcgaaatct caccgactat agcttagcgc ggtatgcttt tgatttctat
    1351  gaaatgactt cgcgcacacc agccagagct aaggaagccc acatgcagat
    1401  gaaagccgca gcagttcgtg gttcaaacac acgtctgttc ggtctggacg
    1451  gaaatgtcgg cgagacccag gagaatacag agagacacac agctggtgac
    1501  gttagtcgca atatgcactc tctgttggga gtgcagcagc accactagtc
    1551  tcctggaaac cctgtttgca gtacctatag tatattacta aatagtatgc
    1601  ttgtgaggcc ttgcctcgta tgtatgtgag gttatacctc gtatttacta
    1651  tttcagtgta tgtacttcaa gcgtgagcca gtctgcagga cacagggttg
    1701  gacccagtgt cttctggtgt agcgtgtact agcgtcgaac caatggacgg
    1751  acggcactgg gagtggtttt accattggtg ctgcgagtct cttggtgaga
    1801  gacaaaaaaa aaaaaaaaaa