Sequence of DPV Sugarcane mosaic virus

Sugarcane mosaic virus RNA, 3'-end of genome, isolate Scmv-Bg

ACC No: AJ006201

Dated: 2003-03-04 | Length: 1816 | CRC: -1865285981

                !!NA_SEQUENCE 1.0
ID   SMVAJ6201  standard; RNA; VRL; 1816 BP.
XX
AC   AJ006201;
XX
SV   AJ006201.1
XX
DT   07-JAN-1999 (Rel. 58, Created)
DT   04-MAR-2003 (Rel. 75, Last updated, Version 2)
XX
DE   Sugarcane mosaic virus RNA, 3'-end of genome, isolate Scmv-Bg
XX
KW   coat protein; inclusion protein; polyprotein.
XX
OS   Sugarcane mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1816
RA   Kong P.;
RT   ;
RL   Submitted (14-MAY-1998) to the EMBL/GenBank/DDBJ databases.
RL   Kong P., Max-Planck-Institut fuer Zuechtungsforschung, Genetic Principles
RL   of Plant Breeding Carl-von-Linne-Weg 10, Koeln, D-50829, GERMANY.
XX
RN   [2]
RA   Kong P., Steinbss H.H., Sohn A.;
RT   "Partial sequence of Sugarcane Mosaic Potyvirus.";
RL   Unpublished.
XX
DR   GOA; Q9YJX2; Q9YJX2.
DR   SPTREMBL; Q9YJX2; Q9YJX2.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1816
FT                   /db_xref="taxon:12224"
FT                   /sequenced_mol="RNA"
FT                   /virion
FT                   /organism="Sugarcane mosaic virus"
FT                   /isolate="Scmv-Bg"
FT   CDS             <1. .1548
FT                   /codon_start=1
FT                   /db_xref="GOA:Q9YJX2"
FT                   /db_xref="SPTREMBL:Q9YJX2"
FT                   /product="polyprotein"
FT                   /protein_id="CAA06909.1"
FT                   /translation="NTLMVILAFNYAMLSSGIKEDEIDNCCRMFANGDDLLLAVHPNFE
FT                   HILDGFQNHFGNLGLNFEFTSRTKDKSELWFMSTRGIKCEGVYIPKLEKERIVAILEWD
FT                   RSNLPEHRLEAICAAMVEAWGYPDLVQEIRKFYAWLLEMQPFANLAKEGLAPYIAETAL
FT                   RNLYLGTGIKEEEIEKYYKQFAKDLPGYIEDYNEEVFHQSGSVDAGAQGGNSGSGASTP
FT                   AAGSGSGTRPPSTGSAAQGNTPTASGGSSGNNGSNQSGSNGTGNQAGASGTGDQRDKDV
FT                   DVGSTGKISVPKLKAMSKKMRLPKAKGKDVLHLDFLLTYKPQQQDISNTRATKEEFDRW
FT                   YDAIKKEYEIDDTQMTVVMSGLMVWCIENGCSPNINGNWTMMDGNEQRVFPLKPVIENA
FT                   SPTFRQIMHHFSDAAEAYIEYRNSTERYMPRYGLQRTLTDYSLARYAFDFYEMTSRTPA
FT                   RAKEAHMQMKAAAVRGSNTRLFGLDGNVGETQENTERHTAGDVSRNMHSLLGVQQHH"
FT   mat_peptide     <1. .606
FT                   /product="NIb nuclear inclusion protein b"
FT   mat_peptide     607. .1545
FT                   /product="coat protein"
FT   3'UTR           1549. .1816
XX
SQ   Sequence 1816 BP; 598 A; 359 C; 434 G; 425 T; 0 other;

 AJ006201  Length: 1816  March 18, 2003 10:57  Type: N  Check: 397  ..

       1  aacacactca tggtcatatt agcattcaat tatgcaatgt tatcgagtgg
      51  tatcaaagaa gatgaaatag acaactgctg ccgaatgttc gctaatggag
     101  acgatctatt gctggcagtg catccgaact ttgaacatat actggatgga
     151  tttcaaaatc actttggaaa tttaggcctc aattttgagt ttacatcacg
     201  aacaaaggac aaatcagaac tgtggtttat gtccacacga ggtatcaaat
     251  gtgagggcgt ctatatacca aagcttgaga aagaaagaat agttgctata
     301  ctcgagtggg atcggtcaaa cttacctgag caccgtctcg aagctatatg
     351  cgcagccatg gtagaagcat ggggatatcc agaccttgtt caagaaatac
     401  gaaagttcta tgcgtggctt ctcgaaatgc aaccattcgc aaatctagcg
     451  aaggagggct tagcaccata tatagcagaa accgcactca gaaatttata
     501  cttgggcaca ggaatcaagg aagaggagat tgaaaaatac tataaacagt
     551  ttgctaaaga tctccctggc tatatagaag actataatga ggaagttttc
     601  catcaatccg gttctgtgga tgcgggagct caaggaggaa atagtggctc
     651  aggagcatcc actcctgcag cgggtagtgg gtcaggaact agaccacctt
     701  caactggatc agcagcacaa ggaaatacac ctacagcatc aggtggatca
     751  tcaggaaaca atggaagcaa tcaatcaggt tcaaatggca ccggaaatca
     801  agcaggcgca agcggaacag gggatcaaag agacaaagat gtcgacgttg
     851  gttcaacagg aaagatatca gtgccaaaac ttaaggcgat gtcgaagaaa
     901  atgcgtctgc caaaggcaaa aggaaaagat gtcttacact tagattttct
     951  gttgacatat aaaccacaac aacaagacat atcaaacact agagcaacca
    1001  aggaagagtt tgatagatgg tatgacgcca taaagaagga gtatgaaatt
    1051  gatgacacac aaatgacagt tgtcatgagt ggtctcatgg tatggtgcat
    1101  cgaaaatggt tgctcaccaa acataaacgg gaattggacg atgatggatg
    1151  gaaatgaaca aagggttttt ccattgaaac cagttattga aaatgcatct
    1201  ccaactttcc gacaaattat gcatcacttc agtgatgcag ctgaagcgta
    1251  tatagagtac cgaaactcta cagagcgata tatgccaaga tacggacttc
    1301  agcgaactct caccgactat agcttagcac ggtatgcttt tgatttctat
    1351  gaaatgactt cacgcacacc agctagagct aaggaagccc acatgcagat
    1401  gaaggccgca gcagttcgtg gttctaacac acgcctgttc ggtctggacg
    1451  gaaatgtcgg cgagactcag gagaatacag agagacacac agctggcgac
    1501  gtcagtcgca acatgcactc tctgttggga gtgcagcagc accactagtc
    1551  tcctggaaac cctgtttgca gtacctatag tacgtacttt ataattgata
    1601  tggtatgtat gtgaggcttt gcctcgggtt tactatttaa ttacgtatgt
    1651  actttaagtg tgaaccagtc tgcaggatac agggttggac tcagtgtctt
    1701  ctggcgtagc acgtactagc gtcgagccac gtcacggaca gcattgggga
    1751  tggctttgcc atgggtgctg cgagtttctt ggtaagagac aaaaaaaaaa
    1801  aaaaaaaaaa aaaaaa