Sequence of DPV Soil-borne cereal mosaic virus
Soil-borne cereal mosaic virus RNA2 complete genome
ACC No: AJ132577
Dated: 2003-02-11 | Length: 3683 | CRC: 521762870
!!NA_SEQUENCE 1.0
ID EWH132577 standard; RNA; VRL; 3683 BP.
XX
AC AJ132577;
XX
SV AJ132577.1
XX
DT 08-OCT-1999 (Rel. 61, Created)
DT 11-FEB-2003 (Rel. 74, Last updated, Version 3)
XX
DE Soil-borne cereal mosaic virus RNA2 complete genome
XX
KW coat protein; coat protein readthrough; complete genome; cp gene;
KW cp-RT gene; ORF3.
XX
OS Soil-borne cereal mosaic virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Furovirus.
XX
RN [1]
RP 1-3683
RA Adams M.J.;
RT ;
RL Submitted (27-JAN-1999) to the EMBL/GenBank/DDBJ databases.
RL Adams M.J., Crop and Disease Management, IACR-Rothamsted, Harpenden, Herts
RL AL5 2JQ, UK.
XX
RN [3]
RA Diao A., Chen J., Gitton F., Antoniw J.F., Mullins A.M., Hall A.M.,
RA Adams M.J.;
RT "Sequences of European wheat mosaic virus and oat golden stripe virus and
RT genome analysis of the genus Furovirus";
RL Virology 261:331-339(1999).
XX
DR SPTREMBL; Q9IWB0; Q9IWB0.
DR SPTREMBL; Q9QCE5; Q9QCE5.
DR SPTREMBL; Q9QCE6; Q9QCE6.
XX
FH Key Location/Qualifiers
FH
FT source 1. .3683
FT /country="France"
FT /db_xref="taxon:100887"
FT /virion
FT /organism="Soil-borne cereal mosaic virus"
FT /segment="RNA2"
FT /specific_host="Triticum aestivum (wheat)"
FT CDS 208. .2592
FT /db_xref="SPTREMBL:Q9IWB0"
FT /note="may be initiated at position 328"
FT /transl_except=(pos:856. .858,aa:OTHER)
FT /gene="cp-RT"
FT /product="coat protein readthrough"
FT /function="virion assembly and fungus transmission"
FT /protein_id="CAB57863.1"
FT /translation="MDKLTRLKGEVDRSLQKAADKVTAESTESLQSKVVVQLPQMAVKN
FT GYTGYNKELNLMASIHPFIRLGTLISQIEGWQATRASILTHLGVMLNGVSKLGERNFFS
FT RQKRFGTHTQDGDEIFCDLGGEAVMQIITRLTVSLQSAKGEGSQTRNAMIGTTPTTNQF
FT EGEEQGQTDQTLAISNALAEFMTFIHTKDFTTNECYTQDSFEAKFNLKWEGTSXRDGVS
FT GKLRARIVEDFQNRLVLADDLGVFPRRNLSGEVIRDEPEIIYAELEDKLLSFESSVYHP
FT KAVTMETEVSVLPKLQTDLETGNAEEDIETTVVTEVLIDEESSYFWLYLVFLLLSILIS
FT CFIALSRWFICFLGNRGGRGGPFFRRIATALWSARLWLLSKAARRYGNLGIVRKRYTRA
FT GVRRYLRDYNFQFDEWESVVDCAPSEALIVADQRMFVRAVNKIVDLKGDFDAIEIVKKT
FT FLNYGVRNYKVERWLNRHTIRSALGVLSDVTRREVLTLTDGMLSLENATLDELLGCDVE
FT SQRNSMYFKDIVALQFAFRLIGAPEFSDFVMAYKGTLYRCYVEATKRHTSMLEQFHVSE
FT DQKRRNEKALEWLLMLGQGAFVFSAAVTAGVTIFKIHKWIKSRMLLRALQMLPSVGGGG
FT NEGGGRFSEEALNRFAASQTPEERIEALHTDFDTAADDMESFLPEDMQAEIRHVIQAHV
FT DGTYHAADLPFLGDMSDAVVPAMADSVVDLSNVSSDVGSVDTSVSSVTSKVRRRAVASN
FT TRIYPSVGNVRYSDIKSPRVSGKSGISSMKMKITSRPMLAS"
FT CDS 208. .858
FT /db_xref="SPTREMBL:Q9QCE6"
FT /note="may be initiated at position 328"
FT /gene="cp"
FT /product="coat protein"
FT /protein_id="CAB57864.1"
FT /translation="MDKLTRLKGEVDRSLQKAADKVTAESTESLQSKVVVQLPQMAVKN
FT GYTGYNKELNLMASIHPFIRLGTLISQIEGWQATRASILTHLGVMLNGVSKLGERNFFS
FT RQKRFGTHTQDGDEIFCDLGGEAVMQIITRLTVSLQSAKGEGSQTRNAMIGTTPTTNQF
FT EGEEQGQTDQTLAISNALAEFMTFIHTKDFTTNECYTQDSFEAKFNLKWEGTS"
FT CDS 2662. .3159
FT /db_xref="SPTREMBL:Q9QCE5"
FT /note="ORF3"
FT /note="cysteine-rich"
FT /product="hypothetical protein"
FT /protein_id="CAB57865.1"
FT /translation="MSACAFHSCDKCVDGPKNVVCVSKYRHSVYKVMGLSVVKCRLPAD
FT CGVNCGMPAAFVLEDGHPRLTLDGYCGEKHKGYVISGAWRHAQLRTLNDELDKLEKRGE
FT FLKTQIRVLSETANANTAPVYAPTKINRMKAEVQDVNVKIQDRSTALAGVMDAVALNLS
FT PK"
XX
SQ Sequence 3683 BP; 981 A; 644 C; 966 G; 1092 T; 0 other;
AJ132577 Length: 3683 February 19, 2003 09:04 Type: N Check: 5302 ..
1 attatcatta tcacgttacg ttgagtgtta actcttcttg tgatattacc
51 tttcttacca ggataagaaa taaaatattt tctgggttat cactatctcg
101 aaacttagca gagactaaca tctcgctgct ctaggcctgc aatgcaataa
151 atcctaggta gtcagctgtt agcgtgtgac gttgaaagat agtgttattt
201 cggttcgctg gataagctta cgagacttaa aggtgaggtc gacaggtcct
251 tacaaaaggc tgcggataag gtcactgctg aaagtactga atcgttacaa
301 tcgaaagtgg ttgtgcagtt acctcaaatg gctgtcaaga acggttatac
351 gggttacaac aaggaattga atttgatggc atctattcat cctttcatta
401 ggctgggtac tttgataagt cagattgagg gatggcaagc aacacgagct
451 agcatactta cccatttagg tgtaatgctc aacggtgtta gtaagttagg
501 tgagcgaaat ttcttctcta gacagaaaag atttgggaca cacactcagg
551 acggtgacga gatattttgt gaccttggag gtgaggcagt tatgcaaatc
601 atcaccagac tcacagtatc actacaatcc gcgaagggtg agggttccca
651 gaccagaaat gctatgatag ggacgacgcc gactaccaac caatttgagg
701 gtgaggaaca aggtcaaact gatcagacgt tagccatttc gaatgcgctg
751 gctgagttta tgactttcat ccacactaaa gatttcacga caaatgagtg
801 ttacacgcaa gactcttttg aagccaaatt taatttgaag tgggaaggta
851 ccagttgacg ggacggcgtc tcgggaaagt tgagggcacg cattgtcgaa
901 gatttccaga ataggctggt tttggccgac gatttgggtg tttttccgag
951 acgcaatctt agcggtgagg tgataaggga cgagcctgaa ataatatatg
1001 cagaactaga ggacaagctc ttgagctttg agagttctgt atatcatcct
1051 aaagctgtga ctatggagac agaagtgtct gtattgccga aattgcaaac
1101 ggatcttgaa acaggtaacg ctgaagaaga cattgagaca actgtggtta
1151 ctgaggtact catcgatgag gagagcagtt acttctggtt atacctcgta
1201 tttctcttat tgtctatcct tatatcgtgt ttcattgcgc tgtcgcgatg
1251 gtttatatgt tttctcggta atagaggagg gcgcggtggc cctttctttc
1301 ggagaatagc cactgcattg tggagcgcgc gactgtggct gttaagtaag
1351 gcggccagac gttacggcaa tcttggaatc gtacgaaaga gatatacacg
1401 tgctggcgtg cgcaggtact tgcgtgatta taatttccaa tttgatgaat
1451 gggaaagcgt ggttgactgt gctccgagtg aagctctaat cgtcgcagat
1501 cagagaatgt ttgtgagggc tgtgaacaag attgtggatt taaagggtga
1551 ttttgatgct attgaaattg tcaagaagac tttcctgaat tacggagtcc
1601 gcaattacaa agtggaaaga tggttgaaca ggcatacaat acgctcggca
1651 cttggtgtac tgagcgatgt tacgaggaga gaagtactta cattaactga
1701 tggtatgcta tcattggaga acgctacgct tgatgagtta ctggggtgtg
1751 atgttgagag tcaacgaaat agcatgtact ttaaggacat tgttgccttg
1801 cagtttgctt ttcgtcttat tggtgcacca gaattctccg actttgtgat
1851 ggcttacaaa ggtactttgt atcgctgtta tgtggaagcg actaagagac
1901 atacttcgat gttggagcag tttcatgtta gtgaagatca gaagagaaga
1951 aacgagaagg cgttagagtg gttgcttatg ctggggcaag gagctttcgt
2001 tttttctgct gctgtaacag ctggtgttac gatcttcaaa attcataaat
2051 ggataaaaag tcgtatgctc ttaagggctc tgcaaatgct accgtctgtt
2101 ggtggtggtg gtaacgaagg tggtggtaga ttttctgagg aggctcttaa
2151 cagatttgca gcaagtcaaa ctcctgagga acgcattgag gctctgcata
2201 ctgatttcga cacggctgct gatgacatgg aaagtttttt accagaagac
2251 atgcaggctg agattagaca tgttattcaa gctcacgttg atggaactta
2301 tcacgcagca gatcttcctt ttctgggcga catgtctgat gccgttgttc
2351 ctgctatggc agattctgtt gtcgatttga gtaatgttag tagtgatgtg
2401 ggaagtgtgg atacgtctgt ttcaagtgtg actagtaagg ttagacgtcg
2451 tgccgttgct agcaacacga ggatttaccc gagtgttggt aatgttaggt
2501 atagtgatat taagtcaccg agggttagtg gtaaaagtgg aattagtagt
2551 atgaaaatga aaatcactag taggcctatg ttggcgtcct agtgtgttgt
2601 ttttaaaatt acttgttcac accgctaccg ctggtctttc tcggtttttc
2651 ttcctaacat tatgtcggct tgcgcttttc actcttgcga taagtgtgtt
2701 gatggaccca agaacgttgt atgtgttagt aaataccgtc atagtgttta
2751 taaggttatg ggcctttctg ttgttaagtg tcgtcttcct gcagattgtg
2801 gtgttaattg tggtatgcct gcagcttttg ttctcgaaga tgggcatcct
2851 agactaactc ttgatggtta ctgtggtgag aaacacaaag gctacgtgat
2901 ttctggtgct tggcgacatg cgcaacttcg tactttaaat gatgaacttg
2951 ataagttgga gaagaggggg gagtttttga aaactcagat aagagtgctc
3001 agtgaaactg ctaacgctaa cactgctcct gtatatgctc ccacgaaaat
3051 taatcgtatg aaggcggagg ttcaggatgt taatgtaaaa atccaggacc
3101 gtagtactgc tcttgcaggt gtcatggatg ctgtcgcgtt gaatttatca
3151 ccgaaatagt tcgccacgga agtgtggagc catatgatga gtacgttaac
3201 gttgtatttg tataatggtt atatgtgtgt actggaatag gtaaccagga
3251 taaagaaccc tagcgaaaat gtcctaccaa aacattatgc attgtggttt
3301 tgttgtgtgg tttgtttttg cttatattgc tatgttgcat gtgtgtgtta
3351 aaaatagtct aacatgtcgg gcagagacac gtcgttgccg tcacgataga
3401 cggagccgct gggattgcgg attataaatc gaacaagcct atttgtacgg
3451 gtcgagtaca aacgtggcca tcacgataga tggttctgtt tttcgaacag
3501 atgtaaatcg gaggcgtcgt gcagtacggt aaactgcaca tctatcctct
3551 agtttctatt gatgtaattg aaaaaagatc aatattttac gatgatgagg
3601 agcgactggt ggtcgcggta gctatgacac agctactaag aggggttcaa
3651 atcccccccc gaaccggagg gtaatccggc cca